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[187120_at] 7TM chemoreceptor, srw family

Description R11G11.13 /REP_DB=WormBase Gene ID /WP=CE12764 /TR=O16955 /GB=AAC69087.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 42      4grp_total > 02      6grp_cgc > 60      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 4.6
(-2.7)
A 		5
(-2.6)
A 		2.9
(-3)
A 		34.6
(3)
A 		32
B 8.7
(3)
A 		5.7
(-0.1)
A 		5.7
(-0.1)
A 		2.9
(-3)
A 		6
C 4.2
(-2.6)
A 		4.8
(-2.5)
A 		1.3
(-3)
A 		44.9
(3)
A 		44
avr 5.8
(-2.4) 		5.2
(-2.5) 		3.3
(-3) 		27.5
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 6.8
(3)
A 		3.4
(-1.3)
A 		3.8
(-0.8)
A 		4.5
(0.1)
A 		2.3
(-2.6)
A 		2
(-3)
A 		5
B 3.2
(0.1)
A 		2
(-3)
A 		4.3
(3)
A 		2.9
(-0.7)
A 		3.1
(-0.1)
A 		4.1
(2.5)
A 		2
C 5.2
(0.3)
A 		5.6
(0.7)
A 		8.1
(3)
A 		6.8
(1.8)
A 		3
(-1.8)
A 		1.7
(-3)
A 		6
avr 5.1
(2.4) 		3.7
(-0.6) 		5.4
(3) 		4.7
(1.5) 		2.8
(-2.6) 		2.6
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.7
(-1.7)
A 		1.1
(-2.6)
A 		0.8
(-3)
A 		5.1
(3)
A 		4
B 2.8
(3)
A 		1.4
(-0.8)
A 		1.3
(-1.1)
A 		0.6
(-3)
A 		2
C 1.4
(-2.2)
A 		1.4
(-2.2)
A 		0.4
(-3)
A 		7.6
(3)
A 		7
avr 2
(-1) 		1.3
(-2.2) 		0.8
(-3) 		4.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.3
(3)
A 		1.2
(2.3)
A 		0.8
(-0.8)
A 		1.1
(1.5)
A 		0.7
(-1.5)
A 		0.5
(-3)
A 		1
B 1.1
(0)
A 		0.7
(-3)
A 		1
(-0.8)
A 		0.8
(-2.3)
A 		1.3
(1.5)
A 		1.5
(3)
A 		1
C 1.9
(2.2)
A 		1.7
(1.4)
A 		2.1
(3)
A 		1.4
(0.2)
A 		1
(-1.4)
A 		0.6
(-3)
A 		2
avr 1.4
(3) 		1.2
(0.6) 		1.3
(1.8) 		1.1
(-0.6) 		1
(-1.8) 		0.9
(-3) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187120_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15859
Sequence Type Exemplar sequence
Representative Public ID R11G11.13 NCBI
Target Description R11G11.13 /REP_DB=WormBase Gene ID /WP=CE12764 /TR=O16955 /GB=AAC69087.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070831
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
R11G11.13 ENSEMBL cdna:known chromosome:CEL140:V:519681:521446:-1 gene:R11G11.13 None
NM_070831 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-107) (srw-107) mRNA, complete cds. None
GENEFINDER00000021498 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:517680:521236:-1 None
SNAP00000021487 ENSEMBL cdna:SNAP chromosome:CEL140:V:520359:521236:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021486 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:519680-521446(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-107
Ensembl R11G11.13
Entrez Gene 187831 Entrez gene
SwissProt O16955 EMBL-EBI
WormBase CE34359 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503232 Serpentine Receptor, class W family member (srw-107) [Caenorhabditis elegans] gb|AAC69087.2| Serpentine receptor, class w protein 107 [Caenorhabditis elegans] 0.0
blast NP_503231 R11G11.12 [Caenorhabditis elegans] gb|AAC69086.1| Hypothetical protein R11G11.12 [Caenorhabditis elegans] 0.0
blast AAB69956 Serpentine receptor, class w protein 109 [Caenorhabditis elegans] ref|NP_503261.2| Serpentine Receptor, class W family member (srw-109) [Caenorhabditis elegans] 1.0E-114
blast CAE71063 Hypothetical protein CBG17906 [Caenorhabditis briggsae] 1.0E-113
blast CAE71065 Hypothetical protein CBG17908 [Caenorhabditis briggsae] 1.0E-105
blast AAP40513 Serpentine receptor, class w protein 101 [Caenorhabditis elegans] ref|NP_001024317.1| Serpentine Receptor, class W family member (srw-101) [Caenorhabditis elegans] 4.0E-93
blast NP_503232 Serpentine Receptor, class W family member (srw-107) [Caenorhabditis elegans] gb|AAC69087.2| Serpentine receptor, class w protein 107 [Caenorhabditis elegans] 8.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.4E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503232.2 5 24-46,146-168,216-238,271-293,308-330
R11G11.13 5 24-46,146-168,216-238,271-293,308-330
SNAP00000021487 1 76-98
GENEFINDER00000021498 1 51-73
Sequence
Target Sequence 
>C. ELEGANS:187120_AT
ggtttatactagatttgcgcccagaatcaaattacggcaagcttgtactcattcgaactt
actttattttagacgtgatatgttctcatgtaagttgtacaactgaaagcacccgtagac
cgtcggctgcaaagtctgtaaaaaaaagatgccttacagtagacaatttccagtttcttc
caagtctagctctccccatcctaactttatttcttctccgcgaaatgcgaattatcaaac
aatcaaggtcaacacttcaaaggagtggtgtcgtggtggacaatgaagaaaaatatgggc
tcccgacaaagcttatagccttattgacaatcacctctttcctggcagatacaccattgg
gatgtattggtatcgcaaaagccttcattcaacagggtaccaaattgatgcgattcctga
cagatcttatcgtgtactttaacattttgaccactgccatgactatattccatccagtta
tgtgtcttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTTATACTAGATTTGCGCCCAGA 254 501 458 Antisense
ACGGCAAGCTTGTACTCATTCGAAC 255 97 491 Antisense
ACAACTGAAAGCACCCGTAGACCGT 283 113 556 Antisense
GTAGACCGTCGGCTGCAAAGTCTGT 671 453 572 Antisense
CAATTTCCAGTTTCTTCCAAGTCTA 359 179 621 Antisense
CCTTATTGACAATCACCTCTTTCCT 13 269 776 Antisense
ACCTCTTTCCTGGCAGATACACCAT 79 89 790 Antisense
GGTATCGCAAAAGCCTTCATTCAAC 423 505 826 Antisense
GATGCGATTCCTGACAGATCTTATC 494 413 864 Antisense
TGACCACTGCCATGACTATATTCCA 605 569 905 Antisense
TATTCCATCCAGTTATGTGTCTTCT 536 663 923 Antisense
Sequence Source Affymetrix Proprietary Database