[Home] | [Total List]

[187119_at]

Description Y39F10C.1 /REP_DB=WormBase Gene ID /WP=CE21732 /TR=Q9TYM7 /GB=AAD12828.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 19.1
(-2.5)
A 		12.8
(-3)
A 		25.8
(-2)
A 		94.8
(3)
A 		82
B 44.1
(3)
A 		28.4
(0.4)
A 		31.3
(0.9)
A 		7.6
(-3)
A 		37
C 21.6
(-2.6)
A 		22.3
(-2.5)
A 		18.1
(-3)
A 		66.1
(3)
A 		48
avr 28.3
(-1.8) 		21.2
(-3) 		25.1
(-2.3) 		56.2
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 16.8
(-3)
A 		18.4
(-2.7)
A 		53.3
(3)
A 		42.7
(1.3)
A 		25.9
(-1.5)
A 		25.5
(-1.6)
A 		37
B 31.4
(1)
A 		9.6
(-3)
A 		41.9
(3)
A 		19.7
(-1.1)
A 		39.5
(2.6)
A 		9.7
(-3)
A 		32
C 26.4
(-0.3)
A 		57.6
(3)
A 		8.2
(-2.3)
A 		6.2
(-2.5)
A 		21.2
(-0.9)
A 		1.2
(-3)
A 		56
avr 24.9
(0.4) 		28.5
(1.4) 		34.5
(3) 		22.9
(-0.1) 		28.9
(1.5) 		12.1
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 6.9
(-0.8)
A 		2.8
(-3)
A 		6.8
(-0.8)
A 		13.9
(3)
A 		11
B 14.1
(3)
A 		7
(-0.4)
A 		7.3
(-0.3)
A 		1.6
(-3)
A 		13
C 7.2
(-1.9)
A 		6.4
(-2.9)
A 		6.3
(-3)
A 		11.1
(3)
A 		5
avr 9.4
(3) 		5.4
(-3) 		6.8
(-0.9) 		8.9
(2.3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 3.1
(-3)
A 		6.5
(-0.6)
A 		11.6
(3)
A 		10.8
(2.4)
A 		7.8
(0.3)
A 		6.2
(-0.8)
A 		9
B 10.9
(0.6)
A 		3.2
(-3)
A 		10.2
(0.3)
A 		5.2
(-2.1)
A 		16
(3)
A 		3.6
(-2.8)
A 		13
C 9.8
(0.3)
A 		17.6
(3)
A 		2.1
(-2.4)
A 		1.3
(-2.7)
A 		6.9
(-0.7)
A 		0.4
(-3)
A 		17
avr 7.9
(1) 		9.1
(2) 		8
(1.1) 		5.8
(-0.9) 		10.2
(3) 		3.4
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187119_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5082
Sequence Type Exemplar sequence
Representative Public ID Y39F10C.1 NCBI
Target Description Y39F10C.1 /REP_DB=WormBase Gene ID /WP=CE21732 /TR=Q9TYM7 /GB=AAD12828.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061385(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061385 NCBI Caenorhabditis elegans Y39F10C.1 (Y39F10C.1) mRNA, complete cds. 11/11 None
SNAP00000038051 ENSEMBL cdna:SNAP chromosome:CEL140:II:674438:678158:1 11/11 None
GENEFINDER00000038052 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:674438:678318:1 11/11 None
Y39F10C.1 ENSEMBL cdna:known chromosome:CEL140:II:674438:677029:1 gene:Y39F10C.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:674437-677029(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39F10C.1
Entrez Gene 189761 Entrez gene
SwissProt Q9TYM7 EMBL-EBI
WormBase CE21732 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12828 Hypothetical protein Y39F10C.1 [Caenorhabditis elegans] ref|NP_493786.1| Y39F10C.1 [Caenorhabditis elegans] 1.0E-177
blast AAD12828 Hypothetical protein Y39F10C.1 [Caenorhabditis elegans] ref|NP_493786.1| Y39F10C.1 [Caenorhabditis elegans] 1.0E-132
blast AAD12828 Hypothetical protein Y39F10C.1 [Caenorhabditis elegans] ref|NP_493786.1| Y39F10C.1 [Caenorhabditis elegans] 1.0E-129
blast NP_500684 Y9C9A.1 [Caenorhabditis elegans] gb|AAF60927.1| Hypothetical protein Y9C9A.1 [Caenorhabditis elegans] 3.0E-45
blast AAD14740 Hypothetical protein Y40B10B.1 [Caenorhabditis elegans] ref|NP_503538.1| Y40B10B.1 [Caenorhabditis elegans] 1.0E-42
blast NP_500684 Y9C9A.1 [Caenorhabditis elegans] gb|AAF60927.1| Hypothetical protein Y9C9A.1 [Caenorhabditis elegans] 2.0E-42
blast CAE68539 Hypothetical protein CBG14366 [Caenorhabditis briggsae] 2.0E-40
blast NP_500684 Y9C9A.1 [Caenorhabditis elegans] gb|AAF60927.1| Hypothetical protein Y9C9A.1 [Caenorhabditis elegans] 3.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 1.1E-105
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 1.2E-98
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 4.4E-98
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000038051 1 468-490
GENEFINDER00000038052 1 453-475
Sequence
Target Sequence 
>C. ELEGANS:187119_AT
ttcgataacactgggctcaatgctgtgaggctttactgtcagagaattggagcaagtaat
tcgaccaacggatccttaaatccaataatgagtggagaaggtgctgatggaaaatgggga
gaagttaaatggtgtccaaatggtacagtaatcactggcttctcgttgaaatcagtgcca
gatcgtgggccattcaaggatgatctgggagccacctcattccgtgtgtattgtggaaac
ccgtttgaaggtcggagcacaaaattgctcttggaaagtgacaaaaatgagtggggtact
tggactggcgatcaattttgtgataagggtttcgcggtgtgtggaatcaagagtcaagtt
gaagctcgggcaaaagatacgacggctctgaataatgtaaacctgcactgctgcccagta
tccgaagatgttaaactaacaagttgtactccgaaccttgtggcgattaggattgatact
ctggataatagacgcggtgacaccaaactagtcagagagcatcttgtcactaaatcctat
acacgtaccaaccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGATAACACTGGGCTCAATGCTG 260 695 331 Antisense
ATGCTGTGAGGCTTTACTGTCAGAG 403 41 350 Antisense
CAGTAATCACTGGCTTCTCGTTGAA 523 207 476 Antisense
ATCAGTGCCAGATCGTGGGCCATTC 484 27 501 Antisense
GGGGTACTTGGACTGGCGATCAATT 629 497 623 Antisense
GTGATAAGGGTTTCGCGGTGTGTGG 390 481 650 Antisense
AATAATGTAAACCTGCACTGCTGCC 680 171 721 Antisense
CACTGCTGCCCAGTATCCGAAGATG 271 199 736 Antisense
TGTACTCCGAACCTTGTGGCGATTA 537 559 775 Antisense
GAGAGCATCTTGTCACTAAATCCTA 569 393 845 Antisense
TAAATCCTATACACGTACCAACCAG 69 635 861 Antisense
Sequence Source Affymetrix Proprietary Database