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[187118_s_at]

Description F52E1.13B /REP_DB=WormBase Gene ID /WP=CE04639 /TR=Q9TY02 /GB=AAD31552.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 88      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 68      6grp_total > 79      4grp_total > 38      6grp_highest_sub > Cu      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 761
1 2 3 4 range
A 2185
(3)
P 		2183.5
(3)
P 		1608.8
(-3)
P 		1741.9
(-1.6)
P 		576
B 2369.7
(3)
P 		1992.3
(-3)
P 		2154
(-0.4)
P 		2193
(0.2)
P 		377
C 2192.3
(3)
P 		1851.3
(-3)
P 		1928.4
(-1.6)
P 		1985
(-0.6)
P 		341
avr 2249
(3) 		2009
(-1.1) 		1897.1
(-3) 		1973.3
(-1.7) 		352

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1760
1 2 3 4 5 6 range
A 1624.9
(-1.4)
P 		2223.7
(0.7)
P 		1193
(-3)
P 		1972.5
(-0.2)
P 		1944.3
(-0.3)
P 		2859.7
(3)
P 		1667
B 1604
(-0.5)
P 		1562.8
(-0.7)
P 		1099.5
(-3)
P 		1724.9
(0.1)
P 		2093.7
(2)
P 		2297.6
(3)
P 		1198
C 1916.6
(-0.6)
P 		1520.5
(-3)
P 		2065.6
(0.3)
P 		1546.7
(-2.8)
P 		2482.2
(2.9)
P 		2501.2
(3)
P 		981
avr 1715.2
(-1.6) 		1769
(-1.3) 		1452.7
(-3) 		1748
(-1.4) 		2173.4
(0.9) 		2552.8
(3) 		1100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 541
1 2 3 4 range
A 795.5
(3)
P 		474
(-0.6)
P 		420.6
(-1.2)
P 		255
(-3)
P 		541
B 755.7
(3)
P 		492.1
(-2.5)
P 		499.1
(-2.3)
P 		467.3
(-3)
P 		288
C 725.7
(3)
P 		532.3
(0)
P 		672.1
(2.2)
P 		334.7
(-3)
P 		391
avr 759
(3) 		499.5
(-0.8) 		530.6
(-0.4) 		352.3
(-3) 		407

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 597
1 2 3 4 5 6 range
A 299.5
(-2.6)
P 		790.8
(3)
P 		259.8
(-3)
P 		500.3
(-0.3)
P 		586.7
(0.7)
P 		696.2
(1.9)
P 		531
B 558.1
(-0)
P 		520.2
(-0.4)
P 		267
(-3)
P 		456.9
(-1.1)
P 		850.6
(2.9)
P 		856.8
(3)
P 		590
C 710.4
(1.6)
P 		463.9
(-1.3)
P 		525.7
(-0.6)
P 		311
(-3)
P 		803.2
(2.6)
P 		837.3
(3)
P 		526
avr 522.7
(-0.7) 		591.6
(0.2) 		350.8
(-3) 		422.7
(-2) 		746.8
(2.3) 		796.8
(3) 		446
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187118_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12400
Sequence Type Exemplar sequence
Representative Public ID F52E1.13B NCBI
Target Description F52E1.13B /REP_DB=WormBase Gene ID /WP=CE04639 /TR=Q9TY02 /GB=AAD31552.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072774(11), NM_072773(11), NM_072772(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072774 NCBI Caenorhabditis elegans F52E1.13b (F52E1.13) mRNA, complete cds. 11/11 None
NM_072773 NCBI Caenorhabditis elegans F52E1.13c (F52E1.13) mRNA, complete cds. 11/11 None
NM_072772 NCBI Caenorhabditis elegans F52E1.13a (F52E1.13) mRNA, complete cds. 11/11 None
SNAP00000034429 ENSEMBL cdna:SNAP chromosome:CEL140:V:8418768:8421261:-1 11/11 None
GENEFINDER00000034436 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8418768:8420740:-1 11/11 None
F52E1.13b.2 ENSEMBL cdna:known chromosome:CEL140:V:8418279:8425326:-1 gene:F52E1.13 11/11 A 
F52E1.13b.1 ENSEMBL cdna:known chromosome:CEL140:V:8418279:8431207:-1 gene:F52E1.13 11/11 A 
F52E1.13c ENSEMBL cdna:known chromosome:CEL140:V:8418768:8447362:-1 gene:F52E1.13 11/11 None
F52E1.13a ENSEMBL cdna:known chromosome:CEL140:V:8418768:8440998:-1 gene:F52E1.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182349 3/11 Cross Hyb Matching Probes None
F52E1.13d 3/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179225 4 3 NM_072772 187118_s_at (11)
NM_072773 187118_s_at (11)
NM_072774 174904_at (11), 187118_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8418768-8425306(-) 100.0 100.0
Public Domain and Genome References
Ensembl F52E1.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO12424 Hypothetical protein F52E1.13b [Caenorhabditis elegans] ref|NP_505175.2| F52E1.13b [Caenorhabditis elegans] 0.0
blast NP_505174 F52E1.13c [Caenorhabditis elegans] 0.0
blast AAO12423 Hypothetical protein F52E1.13a [Caenorhabditis elegans] ref|NP_505173.2| F52E1.13a [Caenorhabditis elegans] 0.0
blast AAZ91354 Hypothetical protein F52E1.13c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 5.9E-14
Pfam IPR004182 EMBL-EBI GRAM domain 2.5E-17
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 5.9E-14
Pfam IPR004182 EMBL-EBI GRAM domain 2.5E-17
Sequence
Target Sequence 
>C. ELEGANS:187118_S_AT
agatgtgcagacgtctttcactcgatcaagagctcgaacttccaattccagacggagcag
ctacatcacagattttggatgaacttatgattcgacaggtgatggacattcttccaccac
gtgctgaaggttacccatgggtcaacatctataattcggaaaagcacggattctcacttg
ccacaatgtacagaaagatggcagaattcgatgaggacctatcaccagttttgctcatca
tcagagacaccaaggaacacgtcttcggagctgtcgtctcgtcagccatcagaccaaatg
atcatttctttggaactggtgacagttgtttattgtggagattcacaggagaagtgcctc
acactcgcgaacttcgccaatacaactggacgggtgataatcagtactttgtaaacgccg
ccaaggattccttatccattggagctggttctggaagaaatggattatggcttgatgctg
acctcaatcatggaagctcgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATGTGCAGACGTCTTTCACTCGA 542 67 1031 Antisense
GCTCGAACTTCCAATTCCAGACGGA 46 297 1062 Antisense
GACGGAGCAGCTACATCACAGATTT 212 377 1081 Antisense
GGTGATGGACATTCTTCCACCACGT 137 501 1128 Antisense
TCCACCACGTGCTGAAGGTTACCCA 564 587 1143 Antisense
GAAAAGCACGGATTCTCACTTGCCA 43 355 1189 Antisense
TATCACCAGTTTTGCTCATCATCAG 500 659 1250 Antisense
GACACCAAGGAACACGTCTTCGGAG 47 367 1276 Antisense
CTCACACTCGCGAACTTCGCCAATA 26 229 1388 Antisense
TAAACGCCGCCAAGGATTCCTTATC 482 639 1442 Antisense
TGACCTCAATCATGGAAGCTCGCAA 151 569 1509 Antisense
Sequence Source Affymetrix Proprietary Database