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[187117_at]

Description T09B9.4 /REP_DB=WormBase Gene ID /WP=CE01652 /TR=SW:Q09350 /GB=CAA87341.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 114.4
(-3)
A 		137.1
(-1.3)
A 		139.8
(-1.1)
A 		195.5
(3)
M 		81
B 95.5
(-3)
A 		161.2
(3)
A 		104.6
(-2.2)
A 		156.1
(2.5)
A 		66
C 169.4
(3)
A 		154.9
(1.9)
A 		88.2
(-3)
A 		120.6
(-0.6)
A 		81
avr 126.4
(-1) 		151.1
(2.2) 		110.9
(-3) 		157.4
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 58.9
(-3)
A 		108.3
(-0.4)
A 		150.7
(1.9)
A 		76.4
(-2.1)
A 		122.4
(0.4)
A 		171.9
(3)
P 		113
B 91.4
(-3)
A 		138.5
(1)
A 		161.2
(3)
A 		139.7
(1.2)
A 		122.1
(-0.4)
A 		142.5
(1.4)
P 		70
C 166.3
(1.3)
A 		145.9
(0.2)
M 		167.5
(1.4)
A 		88.4
(-3)
A 		196.9
(3)
A 		154.1
(0.6)
M 		109
avr 105.5
(-2.6) 		130.9
(0) 		159.8
(3) 		101.5
(-3) 		147.1
(1.7) 		156.2
(2.6) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 41.6
(3)
A 		29.8
(-2.4)
A 		36.6
(0.7)
A 		28.6
(-3)
M 		13
B 30.4
(-0.6)
A 		39.8
(3)
A 		24.2
(-3)
A 		33.3
(0.5)
A 		16
C 56.1
(3)
A 		44.5
(1.1)
A 		30.8
(-1.2)
A 		20.3
(-3)
A 		36
avr 42.7
(3) 		38
(1.2) 		30.5
(-1.8) 		27.4
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 10.9
(-3)
A 		38.5
(2.4)
A 		32.8
(1.3)
A 		19.4
(-1.3)
A 		36.9
(2)
A 		41.8
(3)
P 		31
B 31.8
(-3)
A 		46.1
(1)
A 		39.1
(-0.9)
A 		37
(-1.5)
A 		49.6
(2)
A 		53.1
(3)
P 		21
C 61.6
(2.7)
A 		44.5
(0.5)
M 		42.6
(0.2)
A 		17.8
(-3)
A 		63.7
(3)
A 		51.6
(1.4)
M 		46
avr 34.8
(-0.6) 		43
(1.3) 		38.2
(0.2) 		24.7
(-3) 		50.1
(3) 		48.8
(2.7) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187117_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16312
Sequence Type Exemplar sequence
Representative Public ID T09B9.4 NCBI
Target Description T09B9.4 /REP_DB=WormBase Gene ID /WP=CE01652 /TR=SW:Q09350 /GB=CAA87341.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077239(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077239 NCBI Caenorhabditis elegans T09B9.4 (T09B9.4) mRNA, complete cds. 11/11 None
SNAP00000011000 ENSEMBL cdna:SNAP chromosome:CEL140:X:9772089:9774268:-1 11/11 None
GENEFINDER00000011007 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9772089:9775796:-1 11/11 None
T09B9.4.1 ENSEMBL cdna:known chromosome:CEL140:X:9771645:9774283:-1 gene:T09B9.4 11/11 None
T09B9.4.2 ENSEMBL cdna:known chromosome:CEL140:X:9771646:9774285:-1 gene:T09B9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9772088-9774268(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T09B9.4
Entrez Gene 181190 Entrez gene
SwissProt Q09350 EMBL-EBI
WormBase CE01652 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87341 Hypothetical protein T09B9.4 [Caenorhabditis elegans] ref|NP_509640.1| T09B9.4 [Caenorhabditis elegans] sp|Q09350|YRU4_CAEEL Hypothetical protein T09B9.4 in chromosome X 0.0
blast CAE58706 Hypothetical protein CBG01890 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187117_AT
aagtggcacttcatgcatctgcctcccagaagtataatggtaactcgcctaatgtcagcg
ccaattctccagtggtcaacaccaactcgcccgcagtcagcaccagctcgccacttgtta
gaaacactgaccaacagtccacttcttcttatcgtcagcaactcaacgaaactgcccatt
tgcacattgaaaacaaaaagcttgttggaatgtgcaatcaggagagacgtcgatcgcaag
ctacagaggctgaagtcaaaaaattgaatcaacgcatgtcgaagatggaggctgttttgg
aagctattcgtatcgaagccgttcgcactgatggacctcttgcttggcgacttgctgcat
tgagccatgacaacagcatagatgagcctcctcatcgaatgcttgccgagagaagagcac
atggatcctctcctccgaccgtcgttgttcagcctagcacaagccgtgcaggatcgaact
caactgctaacatcaacaacgatacgcatccgcacgctcaggttgcaccgatcctggcaa
ctgtgcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGGCACTTCATGCATCTGCCTC 465 159 998 Antisense
GTAACTCGCCTAATGTCAGCGCCAA 453 461 1037 Antisense
AACACTGACCAACAGTCCACTTCTT 658 133 1120 Antisense
CTTCTTCTTATCGTCAGCAACTCAA 523 221 1139 Antisense
GCAACTCAACGAAACTGCCCATTTG 543 319 1155 Antisense
GAGAGACGTCGATCGCAAGCTACAG 423 393 1219 Antisense
GTATCGAAGCCGTTCGCACTGATGG 27 455 1307 Antisense
GCGACTTGCTGCATTGAGCCATGAC 524 289 1344 Antisense
CTCCTCATCGAATGCTTGCCGAGAG 73 235 1385 Antisense
AGAAGAGCACATGGATCCTCTCCTC 5 75 1408 Antisense
TGCACCGATCCTGGCAACTGTGCAC 472 575 1521 Antisense
Sequence Source Affymetrix Proprietary Database