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[187115_at]

Description Y38E10A.20 /REP_DB=WormBase Gene ID /WP=CE21601 /TR=Q9NAJ1 /GB=CAB54412.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 15.3
(-2.4)
A 		17.5
(-2.2)
A 		7.9
(-3)
A 		80.5
(3)
A 		73
B 6.6
(-3)
A 		8.5
(-1.1)
A 		12.5
(3)
A 		11.7
(2.2)
A 		6
C 9.6
(-2.9)
A 		9.1
(-3)
A 		12.2
(-2.4)
A 		40.1
(3)
A 		31
avr 10.5
(-3) 		11.7
(-2.8) 		10.9
(-2.9) 		44.1
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 11.3
(-2.3)
A 		31.1
(3)
A 		10.4
(-2.6)
A 		11.9
(-2.2)
A 		8.8
(-3)
A 		9.3
(-2.9)
A 		22
B 12.2
(-1.8)
A 		15
(-1.1)
A 		31.4
(3)
A 		14
(-1.3)
A 		9
(-2.6)
A 		7.3
(-3)
A 		24
C 5.7
(-3)
A 		12.2
(1.5)
A 		7.4
(-1.8)
A 		14.3
(3)
A 		6.3
(-2.6)
A 		13.1
(2.2)
A 		9
avr 9.7
(-2.1) 		19.4
(3) 		16.4
(1.4) 		13.4
(-0.2) 		8
(-3) 		9.9
(-2) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 5.6
(-0.8)
A 		3.8
(-1.9)
A 		2.1
(-3)
A 		11.8
(3)
A 		10
B 2.1
(-3)
A 		2.1
(-3)
A 		2.9
(3)
A 		2.5
(0)
A 		1
C 3.2
(-2.1)
A 		2.6
(-3)
A 		4.3
(-0.6)
A 		6.8
(3)
A 		4
avr 3.6
(-1.9) 		2.8
(-3) 		3.1
(-2.6) 		7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.1
(-3)
A 		11.1
(3)
A 		2.3
(-2.9)
A 		3
(-2.4)
A 		2.7
(-2.6)
A 		2.3
(-2.9)
A 		9
B 4.2
(-1.2)
A 		5
(-0.2)
A 		7.6
(3)
A 		3.7
(-1.8)
A 		3.6
(-1.9)
A 		2.7
(-3)
A 		5
C 2.1
(-2.5)
A 		3.7
(1.3)
A 		1.9
(-3)
A 		2.9
(-0.6)
A 		2.1
(-2.5)
A 		4.4
(3)
A 		3
avr 2.8
(-3) 		6.6
(3) 		3.9
(-1.3) 		3.2
(-2.4) 		2.8
(-3) 		3.1
(-2.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187115_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3769
Sequence Type Exemplar sequence
Representative Public ID Y38E10A.20 NCBI
Target Description Y38E10A.20 /REP_DB=WormBase Gene ID /WP=CE21601 /TR=Q9NAJ1 /GB=CAB54412.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064302(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064302 NCBI Caenorhabditis elegans Y38E10A.20 (Y38E10A.20) mRNA, complete cds. 11/11 None
Y38E10A.20 ENSEMBL cdna:known chromosome:CEL140:II:12654652:12663736:1 gene:Y38E10A.20 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017448 4/11 Cross Hyb Matching Probes None
GENEFINDER00000017467 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12654648-12663733(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38E10A.20
Entrez Gene 189665 Entrez gene
SwissProt Q9NAJ1 EMBL-EBI
WormBase CE21601 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54412 Hypothetical protein Y38E10A.20 [Caenorhabditis elegans] ref|NP_496703.1| Y38E10A.20 [Caenorhabditis elegans] 1.0E-80
blast CAE65388 Hypothetical protein CBG10334 [Caenorhabditis briggsae] 4.0E-35
Sequence
Target Sequence 
>C. ELEGANS:187115_AT
tatccgagtgcaagaatccgccgtcgaagaagaacagtacgtcgagcggaggtgtgttga
cctactcgaaagttgccgatttgcaaggagacgaaacaccacctcggaagaagagctctt
tgaaggagaatattgcggcggcgtttcgatcgccggtctttttgattcggagagaagcta
ctaaagctcgctgggaacaggttcgcgaacgtctgaagctatcgagagtcaagatttcga
tgcgggatcgcaagagaaaagcctccaaatctagccaccaatttcctattggtggcctag
tttttttgaattcctcaatttttctctcgaattcttactcctcttcttcttgctttttgc
ttcaattttccaattttccgggtgttctccgagggcagttaaatgccgctgaaacgccga
ctaccccgatcggtgtcggcgccggtgttcgaaaaaacgtcacgccggaatgtgatcgat
atactgacgatcaagcttcaccaactttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCCGAGTGCAAGAATCCGCCGTC 67 657 62 Antisense
GCGGAGGTGTGTTGACCTACTCGAA 152 291 107 Antisense
AGAATATTGCGGCGGCGTTTCGATC 686 71 188 Antisense
CGATCGCCGGTCTTTTTGATTCGGA 43 249 208 Antisense
AGGTTCGCGAACGTCTGAAGCTATC 575 57 260 Antisense
AGAAAAGCCTCCAAATCTAGCCACC 305 73 316 Antisense
CTTCTTCTTGCTTTTTGCTTCAATT 481 221 404 Antisense
TCCAATTTTCCGGGTGTTCTCCGAG 70 587 430 Antisense
TAAATGCCGCTGAAACGCCGACTAC 148 641 461 Antisense
GCCGACTACCCCGATCGGTGTCGGC 83 271 477 Antisense
TGACGATCAAGCTTCACCAACTTTT 530 569 546 Antisense
Sequence Source Affymetrix Proprietary Database