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[187114_at]

Description Y110A7A.7 /REP_DB=WormBase Gene ID /WP=CE25197 /TR=Q9N591 /GB=AAF60431.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 95      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 73      6grp_total > 75      4grp_total > 02      6grp_high1_sub > In      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1584
1 2 3 4 range
A 456.1
(-2.5)
P 		416.3
(-2.7)
P 		328.3
(-3)
P 		1912.2
(3)
P 		1584
B 489.3
(-2.4)
P 		382.5
(-3)
P 		410.9
(-2.9)
P 		1528.2
(3)
P 		1146
C 434.8
(-2.7)
P 		410.6
(-2.8)
P 		368.3
(-3)
P 		1662
(3)
P 		1294
avr 460.1
(-2.6) 		403.1
(-2.8) 		369.2
(-3) 		1700.8
(3) 		1332

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 456
1 2 3 4 5 6 range
A 372.3
(-3)
P 		507.9
(-0.7)
P 		485.3
(-1.1)
P 		719.1
(2.8)
P 		502.6
(-0.8)
P 		732.3
(3)
P 		360
B 304.3
(-3)
P 		399.3
(-1.5)
P 		464.6
(-0.4)
P 		560
(1.1)
P 		618.1
(2)
P 		680.4
(3)
P 		376
C 497.3
(-1.4)
P 		400.6
(-3)
P 		622.9
(0.7)
P 		574.6
(-0.1)
P 		528
(-0.9)
P 		760.3
(3)
P 		360
avr 391.3
(-3) 		435.9
(-2.2) 		524.3
(-0.6) 		617.9
(1.1) 		549.6
(-0.1) 		724.3
(3) 		333
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 240
1 2 3 4 range
A 166.1
(-0.5)
P 		90.4
(-2.9)
P 		85.8
(-3)
P 		279.9
(3)
P 		194
B 156
(-1.4)
P 		94.5
(-3)
P 		95.2
(-3)
P 		325.7
(3)
P 		231
C 143.9
(-2)
P 		118
(-3)
P 		128.4
(-2.6)
P 		280.2
(3)
P 		162
avr 155.3
(-1.3) 		101
(-3) 		103.1
(-2.9) 		295.3
(3) 		194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 68.6
(-3)
P 		180.6
(2.9)
P 		105.7
(-1)
P 		182.4
(3)
P 		151.7
(1.4)
P 		178.3
(2.8)
P 		114
B 105.9
(-3)
P 		132.9
(-1.9)
P 		112.8
(-2.7)
P 		148.3
(-1.3)
P 		251.1
(2.9)
P 		253.7
(3)
P 		148
C 184.3
(-0)
P 		122.2
(-2.7)
P 		158.5
(-1.1)
P 		115.6
(-3)
P 		170.9
(-0.6)
P 		254.5
(3)
P 		139
avr 119.6
(-3) 		145.2
(-1.6) 		125.7
(-2.7) 		148.8
(-1.4) 		191.2
(0.9) 		228.8
(3) 		109
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187114_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2072
Sequence Type Exemplar sequence
Representative Public ID Y110A7A.7 NCBI
Target Description Y110A7A.7 /REP_DB=WormBase Gene ID /WP=CE25197 /TR=Q9N591 /GB=AAF60431.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059127(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059127 NCBI Caenorhabditis elegans Y110A7A.7 (Y110A7A.7) mRNA, complete cds. 10/11 None
SNAP00000029211 ENSEMBL cdna:SNAP chromosome:CEL140:I:5129782:5131050:1 10/11 None
GENEFINDER00000029229 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5129782:5131287:1 10/11 None
Y110A7A.7 ENSEMBL cdna:known chromosome:CEL140:I:5129782:5131069:1 gene:Y110A7A.7 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5129781-5131050(+) 96.91 100.0
Public Domain and Genome References
Gene Title
Ensembl Y110A7A.7
Entrez Gene 190947 Entrez gene
SwissProt Q9N591 EMBL-EBI
WormBase CE23251 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
6629 lipid metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
4182 carboxypeptidase A activity inferred from electronic annotation QuickGO AmiGO
4806 triacylglycerol lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60431 Hypothetical protein Y110A7A.7 [Caenorhabditis elegans] ref|NP_491528.2| Y110A7A.7 [Caenorhabditis elegans] 0.0
blast AAF60431 Hypothetical protein Y110A7A.7 [Caenorhabditis elegans] ref|NP_491528.2| Y110A7A.7 [Caenorhabditis elegans] 1.0E-180
blast AAF60431 Hypothetical protein Y110A7A.7 [Caenorhabditis elegans] ref|NP_491528.2| Y110A7A.7 [Caenorhabditis elegans] 1.0E-178
blast CAE65744 Hypothetical protein CBG10829 [Caenorhabditis briggsae] 1.0E-150
blast CAE65744 Hypothetical protein CBG10829 [Caenorhabditis briggsae] 1.0E-147
blast CAB16546 Hypothetical protein ZK262.3 [Caenorhabditis elegans] ref|NP_507603.1| ZK262.3 [Caenorhabditis elegans] 9.0E-43
blast CAB16546 Hypothetical protein ZK262.3 [Caenorhabditis elegans] ref|NP_507603.1| ZK262.3 [Caenorhabditis elegans] 4.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR002921 EMBL-EBI Lipase, class 3 2.0E-53
Sequence
Target Sequence 
>C. ELEGANS:187114_AT
agtgctggagtgtgattgctgccgacaacgacacaatattcgtcagtttcagtggaacaa
aatcgaaagagcagctggtaactgaacttatcgaaagcattggtcggccaaagcacaaat
tgcacaatgctggatcagttcattattacttctactctgctctaaaaacaatgtggtcac
caatggaaaaactactgcgaggactgaaagactcacttccagatcataaaattgtgttca
caggacactcattgggcggagctattgcaagtattgcatcgactgttttcgttagaaact
ttcccgaaacgtcgagtcgaaccttttcaatcacattcggacagcctagagttggaaatc
tcgaatatgccatgacacatgacaaattagttgctggaggaagctggagactgattcatg
gaagagatattgttgcacatattccgttctgcgtggaaagctatgccagatgcaacactc
atcgctactttgacatcaacgatcacctgttctactttggacaccacgtctcagattacg
gtgttaatggatgtgtagacccaccggatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTGCTGGAGTGTGATTGCTGCCGA 589 59 221 Antisense
GTTCATTATTACTTCTACTCTGCTC 237 445 358 Antisense
GGACTGAAAGACTCACTTCCAGATC 412 525 421 Antisense
TGTTCACAGGACACTCATTGGGCGG 64 563 455 Antisense
GTCGAGTCGAACCTTTTCAATCACA 122 475 531 Antisense
ATCACATTCGGACAGCCTAGAGTTG 487 25 550 Antisense
TTGCACATATTCCGTTCTGCGTGGA 287 703 653 Antisense
TGCAACACTCATCGCTACTTTGACA 235 577 691 Antisense
ACATCAACGATCACCTGTTCTACTT 38 107 713 Antisense
TCTACTTTGGACACCACGTCTCAGA 639 611 731 Antisense
ATGGATGTGTAGACCCACCGGATGA 414 51 767 Antisense
Sequence Source Affymetrix Proprietary Database