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[187113_at]

Description Y71H2B.10 /REP_DB=WormBase Gene ID /WP=CE24628 /TR=Q9N4F3 /GB=AAF36038.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 03      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 41      6grp_total > 24      4grp_total > 62      6grp_highest_sub > De      6grp_cgc > 24      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 740
1 2 3 4 range
A 1185.8
(3)
P 		706.2
(-0.9)
P 		881.8
(0.5)
P 		445.4
(-3)
P 		740
B 924.6
(3)
P 		926.7
(3)
P 		750.7
(0)
P 		573.8
(-3)
P 		353
C 1035.4
(3)
P 		652.5
(-1.4)
P 		872.9
(1.1)
P 		517.1
(-3)
P 		518
avr 1048.6
(3) 		761.8
(-0.2) 		835.1
(0.6) 		512.1
(-3) 		537

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 573
1 2 3 4 5 6 range
A 581.3
(-2.1)
P 		1008
(3)
P 		591
(-2)
P 		776.7
(0.2)
P 		509.4
(-3)
P 		768.7
(0.1)
P 		499
B 951.5
(3)
P 		790.9
(0.5)
P 		744
(-0.2)
P 		738.2
(-0.3)
P 		567.7
(-3)
P 		596.4
(-2.6)
P 		384
C 1081.9
(3)
P 		822.4
(-0.5)
P 		955.1
(1.3)
P 		659.4
(-2.6)
P 		700.9
(-2.1)
P 		632.1
(-3)
P 		450
avr 871.6
(3) 		873.8
(3) 		763.4
(0.6) 		724.8
(-0.2) 		592.7
(-3) 		665.7
(-1.4) 		281
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 367
1 2 3 4 range
A 431.8
(3)
P 		153.3
(-1.6)
P 		230.5
(-0.3)
P 		65.2
(-3)
P 		367
B 294.8
(3)
P 		228.9
(0.7)
P 		173.9
(-1.2)
P 		122.3
(-3)
P 		173
C 342.7
(3)
P 		187.6
(-0.6)
P 		304.2
(2.1)
P 		87.2
(-3)
P 		256
avr 356.4
(3) 		189.9
(-0.8) 		236.2
(0.3) 		91.6
(-3) 		265

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 294
1 2 3 4 5 6 range
A 107.2
(-3)
P 		358.5
(3)
P 		128.7
(-2.5)
P 		197
(-0.9)
P 		153.7
(-1.9)
P 		187.2
(-1.1)
P 		251
B 331.1
(3)
P 		263.2
(0.3)
P 		180.7
(-3)
P 		195.5
(-2.4)
P 		230.6
(-1)
P 		222.4
(-1.3)
P 		150
C 401
(3)
P 		250.9
(-0.4)
P 		243.1
(-0.5)
P 		132.6
(-3)
P 		226.8
(-0.9)
P 		211.6
(-1.2)
P 		268
avr 279.8
(2.4) 		290.9
(3) 		184.2
(-2.5) 		175
(-3) 		203.7
(-1.5) 		207.1
(-1.3) 		116
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187113_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6421
Sequence Type Exemplar sequence
Representative Public ID Y71H2B.10 NCBI
Target Description Y71H2B.10 /REP_DB=WormBase Gene ID /WP=CE24628 /TR=Q9N4F3 /GB=AAF36038.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027766(11), NM_001027768(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027766 NCBI Caenorhabditis elegans Y71H2B.10a (apb-1) mRNA, complete cds. 11/11 None
NM_001027768 NCBI Caenorhabditis elegans Y71H2B.10c (apb-1) mRNA, complete cds. 11/11 None
SNAP00000014007 ENSEMBL cdna:SNAP chromosome:CEL140:III:2584195:2618684:-1 11/11 None
GENEFINDER00000014044 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2589531:2597011:-1 11/11 None
Y71H2B.10a ENSEMBL cdna:known chromosome:CEL140:III:2583973:2597011:-1 gene:Y71H2B.10 11/11 A 
Y71H2B.10c ENSEMBL cdna:known chromosome:CEL140:III:2589513:2597023:-1 gene:Y71H2B.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175376 3 2 NM_001027766 173376_s_at (11), 187113_at (11)
NM_001027767 173376_s_at (11)
NM_001027768 187113_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2589512-2597011(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y71H2B.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36038 C. elegans APB-1 protein, isoform a [Caenorhabditis elegans] ref|NP_001022937.1| Y71H2B.10a [Caenorhabditis elegans] 0.0
blast CAE64987 Hypothetical protein CBG09822 [Caenorhabditis briggsae] 0.0
blast AAP86609 C. elegans APB-1 protein, isoform c [Caenorhabditis elegans] ref|NP_001022939.1| Y71H2B.10c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002553 EMBL-EBI Adaptin, N-terminal 1.0E-126
Pfam IPR008152 EMBL-EBI Alpha/gamma adaptin, C-terminal 1.8E-6
Pfam IPR002553 EMBL-EBI Adaptin, N-terminal 1.0E-126
Pfam IPR008152 EMBL-EBI Alpha/gamma adaptin, C-terminal 1.8E-6
Pfam IPR002553 EMBL-EBI Adaptin, N-terminal 7.9E-37
Pfam IPR002553 EMBL-EBI Adaptin, N-terminal 1.0E-126
Pfam IPR008152 EMBL-EBI Alpha/gamma adaptin, C-terminal 1.8E-6
Sequence
Target Sequence 
>C. ELEGANS:187113_AT
taaatgctccagccgctagtgcaaatacaggagcttttggtggagcaatgagcggaacaa
cttctatgggtggcctcgatgatctactgggtcttggtggagatccgatgccagctgctc
caacaaactcggcttcctataatccatttgatggtcttggtggacttggaggagctgctc
cagctgcaccaccttcccaacagccagcttcaattggaggactcgctgaaatttttggat
ctggtggattcggtggatcttctggaatcacttaccccaaggaattatggttggatgctt
cgaaagcaatgggaatgcaagtggaaggaacatttgttcgacgtggtggaaaaatattca
tggaaatgacaattacgaatcgagcaatgcaggcgatttctggatttgcactgcaattta
ataagaattcgtttgggctgattccggtggaacaagtcaatccggcacctattttgccga
atcaatcgcaaaattacacaatcgcctgtgacacgacgggagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAATGCTCCAGCCGCTAGTGCAAA 121 641 1922 Antisense
GAACAACTTCTATGGGTGGCCTCGA 650 351 1976 Antisense
CCTCGATGATCTACTGGGTCTTGGT 441 265 1995 Antisense
TTGGTGGAGATCCGATGCCAGCTGC 92 707 2015 Antisense
AACTCGGCTTCCTATAATCCATTTG 414 141 2047 Antisense
CTTCTGGAATCACTTACCCCAAGGA 417 219 2180 Antisense
AGGCGATTTCTGGATTTGCACTGCA 142 55 2312 Antisense
GAATTCGTTTGGGCTGATTCCGGTG 699 321 2346 Antisense
GGAACAAGTCAATCCGGCACCTATT 117 529 2370 Antisense
GCACCTATTTTGCCGAATCAATCGC 688 313 2386 Antisense
CAATCGCCTGTGACACGACGGGAGC 123 181 2420 Antisense
Sequence Source Affymetrix Proprietary Database