[Home] | [Total List]

[187112_s_at]

Description Y57G11C.32 /REP_DB=WormBase Gene ID /WP=CE24474 /TR=Q9U205 /GB=CAB54455.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 21      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 90      6grp_total > 31      4grp_total > 23      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 205.1
(3)
P 		132.1
(-1.4)
P 		106.1
(-3)
P 		180.8
(1.5)
P 		99
B 217.7
(3)
P 		106.9
(-3)
P 		109.6
(-2.9)
P 		124.6
(-2)
P 		111
C 220.7
(2.1)
P 		101.3
(-3)
P 		126.3
(-1.9)
P 		240.7
(3)
P 		139
avr 214.5
(3) 		113.4
(-3) 		114
(-3) 		182
(1.1) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 189.4
(3)
P 		183.7
(2.3)
P 		181.9
(2.1)
P 		137.2
(-3)
P 		142
(-2.4)
P 		166.1
(0.3)
P 		52
B 174.7
(1)
P 		160.7
(0.2)
P 		209.5
(3)
P 		202.3
(2.6)
P 		132.6
(-1.3)
P 		103.1
(-3)
P 		106
C 126.8
(-2.1)
P 		206.8
(3)
P 		173.5
(0.9)
P 		163.6
(0.3)
P 		111.9
(-3)
P 		128.3
(-2)
P 		95
avr 163.6
(0.5) 		183.7
(2.5) 		188.3
(3) 		167.7
(0.9) 		128.8
(-3) 		132.5
(-2.6) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 74.7
(3)
P 		28.7
(-2.7)
P 		27.7
(-2.9)
P 		26.5
(-3)
P 		48
B 69.4
(3)
P 		26.4
(-2.9)
P 		25.4
(-3)
P 		26.5
(-2.9)
P 		44
C 73.1
(3)
P 		29.1
(-3)
P 		44
(-1)
P 		40.6
(-1.4)
P 		44
avr 72.4
(3) 		28.1
(-3) 		32.4
(-2.4) 		31.2
(-2.6) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 34.9
(-3)
P 		65.3
(3)
P 		39.6
(-2.1)
P 		34.8
(-3)
P 		42.9
(-1.4)
P 		40.4
(-1.9)
P 		31
B 60.8
(3)
P 		53.5
(1)
P 		50.9
(0.3)
P 		53.6
(1.1)
P 		53.9
(1.2)
P 		38.4
(-3)
P 		22
C 47
(-0.2)
P 		63.1
(3)
P 		44.2
(-0.8)
P 		32.9
(-3)
P 		36.2
(-2.3)
P 		42.9
(-1)
P 		30
avr 47.6
(-0.9) 		60.6
(3) 		44.9
(-1.7) 		40.4
(-3) 		44.3
(-1.8) 		40.6
(-2.9) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187112_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8993
Sequence Type Exemplar sequence
Representative Public ID Y57G11C.32 NCBI
Target Description Y57G11C.32 /REP_DB=WormBase Gene ID /WP=CE24474 /TR=Q9U205 /GB=CAB54455.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070372(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070372 NCBI Caenorhabditis elegans Y57G11C.32 (Y57G11C.32) mRNA, complete cds. 10/11 None
GENEFINDER00000003617 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14642990:14653335:-1 10/11 None
Y57G11C.32 ENSEMBL cdna:known chromosome:CEL140:IV:14642990:14649990:-1 gene:Y57G11C.32 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003447 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14642995-14649941(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57G11C.32
Entrez Gene 178393 Entrez gene
SwissProt Q9U205 EMBL-EBI
WormBase CE35692 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54455 Hypothetical protein Y57G11C.32 [Caenorhabditis elegans] ref|NP_502773.2| Y57G11C.32 [Caenorhabditis elegans] 0.0
blast CAE73926 Hypothetical protein CBG21542 [Caenorhabditis briggsae] 1.0E-55
blast CAE73926 Hypothetical protein CBG21542 [Caenorhabditis briggsae] 2.0E-55
Sequence
Target Sequence 
>C. ELEGANS:187112_S_AT
ttatcaacagacatcatcactcccaccattaacgtcaaaaactcgagagctgtggctgag
aaggattgtattaaatagtacaacaaatcacagagacatcagacaagaaagaactatgga
ttggtttcgttcggtctgtcacccaaagcataggtaccaaacctccttggatctgaaaac
tcccactccaatatctgaaaattctggaaaatccttgtccaccgcccaatcctttgaaaa
tccactttttgctgaaaagaatcccaaaattcccatcgaatggatgaaacttcttccgtt
ggaagcaggaagtgcccgttacgctgataatttgttaacttataataaatcaaaagaaga
tagaaatgttgatatttccactccaaaacaagaacacttctacaagactccatcgtatct
cagttttaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATCAACAGACATCATCACTCCCA 84 681 213 Antisense
TCACTCCCACCATTAACGTCAAAAA 432 627 229 Antisense
CTATGGATTGGTTTCGTTCGGTCTG 568 223 326 Antisense
TTCGGTCTGTCACCCAAAGCATAGG 327 695 342 Antisense
AGGTACCAAACCTCCTTGGATCTGA 354 51 364 Antisense
AAACTCCCACTCCAATATCTGAAAA 543 127 389 Antisense
TTCTGGAAAATCCTTGTCCACCGCC 670 693 414 Antisense
CCGCCCAATCCTTTGAAAATCCACT 69 263 434 Antisense
GGAAGCAGGAAGTGCCCGTTACGCT 236 531 513 Antisense
GAACACTTCTACAAGACTCCATCGT 701 351 604 Antisense
GACTCCATCGTATCTCAGTTTTAAC 210 375 618 Antisense
Sequence Source Affymetrix Proprietary Database