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[187111_at]

Description Y55B1AL.1 /REP_DB=WormBase Gene ID /WP=CE25471 /TR=Q9N391 /GB=AAF59589.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 09      4grp_high_8_8 > 49      6grp_highest_nonorm > 71      6grp_total > 04      4grp_total > 53      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 267
1 2 3 4 range
A 383.4
(3)
P 		302.1
(0.9)
P 		262.8
(-0.1)
P 		152.7
(-3)
A 		231
B 378.4
(3)
P 		247.7
(-0.7)
P 		242
(-0.8)
P 		165.1
(-3)
P 		213
C 417.1
(3)
P 		302
(0.4)
P 		315.8
(0.7)
P 		150.2
(-3)
P 		267
avr 393
(3) 		283.9
(0.2) 		273.5
(-0) 		156
(-3) 		237

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 375
1 2 3 4 5 6 range
A 429.3
(3)
P 		412.9
(2.5)
P 		221.3
(-2.7)
P 		372.8
(1.4)
P 		385.5
(1.8)
P 		210.8
(-3)
P 		219
B 317.1
(2.7)
P 		325.1
(3)
P 		274.9
(1)
P 		282.4
(1.3)
P 		324.5
(3)
P 		174.9
(-3)
P 		150
C 550.1
(3)
P 		239.7
(-2)
P 		338
(-0.4)
P 		260.7
(-1.7)
P 		401.1
(0.6)
P 		177.4
(-3)
P 		373
avr 432.2
(3) 		325.9
(0.4) 		278.1
(-0.8) 		305.3
(-0.1) 		370.4
(1.5) 		187.7
(-3) 		245
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 139.6
(3)
P 		65.6
(-0.8)
P 		68.7
(-0.6)
P 		22.4
(-3)
A 		117
B 120.7
(3)
P 		61.2
(-1.2)
P 		56.1
(-1.5)
P 		35.2
(-3)
P 		86
C 138.1
(3)
P 		86.8
(0.3)
P 		110
(1.5)
P 		25.3
(-3)
P 		113
avr 132.8
(3) 		71.2
(-0.5) 		78.3
(-0.1) 		27.6
(-3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 79.1
(-1.1)
P 		146.9
(3)
P 		48.2
(-3)
P 		94.5
(-0.2)
P 		116.3
(1.1)
P 		51.3
(-2.8)
P 		99
B 110.3
(1.1)
P 		108.2
(0.9)
P 		66.7
(-2.9)
P 		74.8
(-2.1)
P 		131.8
(3)
P 		65.2
(-3)
P 		67
C 203.9
(3)
P 		73.2
(-2.2)
P 		86
(-1.7)
P 		52.4
(-3)
P 		129.8
(0.1)
P 		59.4
(-2.7)
P 		152
avr 131.1
(3) 		109.4
(1.2) 		67
(-2.3) 		73.9
(-1.7) 		126
(2.6) 		58.6
(-3) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187111_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8122
Sequence Type Exemplar sequence
Representative Public ID Y55B1AL.1 NCBI
Target Description Y55B1AL.1 /REP_DB=WormBase Gene ID /WP=CE25471 /TR=Q9N391 /GB=AAF59589.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064810(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064810 NCBI Caenorhabditis elegans Y55B1AL.1 (Y55B1AL.1) mRNA, complete cds. 11/11 None
SNAP00000032739 ENSEMBL cdna:SNAP chromosome:CEL140:III:573971:579834:1 11/11 None
GENEFINDER00000032743 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:573981:576241:1 11/11 None
Y55B1AL.1 ENSEMBL cdna:known chromosome:CEL140:III:573981:576283:1 gene:Y55B1AL.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:573980-576241(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y55B1AL.1
Entrez Gene 3565913 Entrez gene
SwissProt Q9N391 EMBL-EBI
WormBase CE25471 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59589 Hypothetical protein Y55B1AL.1 [Caenorhabditis elegans] ref|NP_497211.1| Y55B1AL.1 [Caenorhabditis elegans] 1.0E-110
blast AAF59589 Hypothetical protein Y55B1AL.1 [Caenorhabditis elegans] ref|NP_497211.1| Y55B1AL.1 [Caenorhabditis elegans] 1.0E-104
blast AAF59589 Hypothetical protein Y55B1AL.1 [Caenorhabditis elegans] ref|NP_497211.1| Y55B1AL.1 [Caenorhabditis elegans] 1.0E-103
blast CAE69234 Hypothetical protein CBG15276 [Caenorhabditis briggsae] 6.0E-89
blast CAE69234 Hypothetical protein CBG15276 [Caenorhabditis briggsae] 6.0E-83
blast CAE69234 Hypothetical protein CBG15276 [Caenorhabditis briggsae] 3.0E-82
Sequence
Target Sequence 
>C. ELEGANS:187111_AT
tccttaacaacttcatgccaactccatcacttataaatcttcaacaaggataccgtaacc
cagatctcggatcccaagatttggcacgtttggacgcttctcgtcatgagagtattcaaa
aagtcagccgtaagcttagtacttatgaggaggagaagaatctcattgagaatgagttgg
aggagatcgaaagaaccggagctcgcctactatcaattgtcgaacaaaaagacaatttct
tggcttcaaggatccgtagatttatggaaaaaagcaaggaattggttggaattgagacac
tactcagattgcaattaaataagcataacgaacgaattaaggatggccttattgatatta
gcgccgcccgtggcgaggagtcgtatctgcaaaaaagattcaaggatacagactttttga
gaaaaatcagcgctcggagggaaattgattatgataaggaattgtctgaaatcttcaccg
acgatcaattccatcgatgggtcatgttcaagaaagccacgttgcagctgcttcaaaccg
aatcctcagtctcctactacattcgggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTTAACAACTTCATGCCAACTCC 439 589 62 Antisense
GCCAACTCCATCACTTATAAATCTT 241 279 78 Antisense
TACCGTAACCCAGATCTCGGATCCC 193 647 112 Antisense
CACGTTTGGACGCTTCTCGTCATGA 373 197 146 Antisense
GATCGAAAGAACCGGAGCTCGCCTA 325 415 246 Antisense
GAGCTCGCCTACTATCAATTGTCGA 23 387 260 Antisense
GGCCTTATTGATATTAGCGCCGCCC 559 535 406 Antisense
CCCGTGGCGAGGAGTCGTATCTGCA 267 261 428 Antisense
ATCTTCACCGACGATCAATTCCATC 646 31 532 Antisense
CTGCTTCAAACCGAATCCTCAGTCT 180 235 589 Antisense
CTCAGTCTCCTACTACATTCGGGAA 483 225 606 Antisense
Sequence Source Affymetrix Proprietary Database