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[187110_at]

Description Y105C5A.25 /REP_DB=WormBase Gene ID /WP=CE24057 /TR=Q9NF63 /GB=CAB55005.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 86      4grp_total > 04      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 8.9
(-3)
A 		13.3
(-2.7)
A 		10.6
(-2.9)
A 		90.4
(3)
A 		82
B 45.3
(3)
A 		13.7
(-2.1)
A 		8.3
(-3)
A 		43.9
(2.8)
A 		37
C 30.8
(-1.1)
A 		8.2
(-3)
A 		34.2
(-0.8)
A 		79.5
(3)
A 		71
avr 28.3
(-1.3) 		11.7
(-3) 		17.7
(-2.4) 		71.3
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 15.8
(-3)
A 		24.2
(-0.8)
A 		21
(-1.6)
A 		18.6
(-2.3)
A 		38.9
(3)
A 		34.5
(1.9)
A 		23
B 33.8
(-0.5)
A 		47.5
(0.9)
A 		50.5
(1.2)
A 		10.1
(-3)
A 		67.5
(3)
A 		61.5
(2.4)
A 		57
C 6.1
(-3)
A 		68
(1)
A 		34.1
(-1.2)
A 		99
(3)
A 		34.4
(-1.2)
A 		81
(1.8)
A 		93
avr 18.6
(-3) 		46.6
(1.2) 		35.2
(-0.5) 		42.6
(0.6) 		46.9
(1.2) 		59
(3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 3.3
(-2.7)
A 		2.9
(-2.9)
A 		2.8
(-3)
A 		13.2
(3)
A 		10
B 14.5
(3)
A 		3.4
(-2.3)
A 		1.9
(-3)
A 		9.4
(0.6)
A 		13
C 10.2
(1.3)
A 		2.4
(-3)
A 		11.9
(2.2)
A 		13.4
(3)
A 		11
avr 9.3
(1.2) 		2.9
(-3) 		5.5
(-1.3) 		12
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 2.9
(-3)
A 		8.6
(0.9)
A 		4.6
(-1.8)
A 		4.7
(-1.8)
A 		11.7
(3)
A 		8.4
(0.8)
A 		9
B 11.8
(-0.8)
A 		15.8
(0.2)
A 		12.3
(-0.7)
A 		2.7
(-3)
A 		27.4
(3)
A 		22.9
(1.9)
A 		25
C 2.3
(-3)
A 		20.7
(1.5)
A 		8.7
(-1.5)
A 		19.9
(1.3)
A 		11.1
(-0.9)
A 		27.1
(3)
A 		25
avr 5.7
(-3) 		15
(1) 		8.5
(-1.8) 		9.1
(-1.5) 		16.7
(1.8) 		19.5
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187110_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8890
Sequence Type Exemplar sequence
Representative Public ID Y105C5A.25 NCBI
Target Description Y105C5A.25 /REP_DB=WormBase Gene ID /WP=CE24057 /TR=Q9NF63 /GB=CAB55005.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070488(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070488 NCBI Caenorhabditis elegans Y105C5A.25 (Y105C5A.25) mRNA, complete cds. 11/11 None
SNAP00000033721 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15860183:15861083:-1 11/11 None
GENEFINDER00000033773 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15860183:15861818:-1 11/11 None
Y105C5A.25 ENSEMBL cdna:known chromosome:CEL140:IV:15860183:15861404:-1 gene:Y105C5A.25 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15860188-15861410(-) 95.96 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105C5A.25
Entrez Gene 190883 Entrez gene
SwissProt Q9NF63 EMBL-EBI
WormBase CE24057 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55005 Hypothetical protein Y105C5A.25 [Caenorhabditis elegans] ref|NP_502889.1| Y105C5A.25 [Caenorhabditis elegans] 1.0E-138
blast CAB55005 Hypothetical protein Y105C5A.25 [Caenorhabditis elegans] ref|NP_502889.1| Y105C5A.25 [Caenorhabditis elegans] 1.0E-116
blast CAB04470 Hypothetical protein F55C9.13 [Caenorhabditis elegans] ref|NP_001023984.1| F55C9.13 [Caenorhabditis elegans] pir||T22723 hypothetical protein F55C9.9 - Caenorhabditis elegans 5.0E-12
blast CAB04471 Hypothetical protein F55C9.8 [Caenorhabditis elegans] ref|NP_507757.1| F55C9.8 [Caenorhabditis elegans] 2.0E-11
Sequence
Target Sequence 
>C. ELEGANS:187110_AT
attcttctcgacaccatacaacagattctgatggcaattcaatgaattctgatgaagaac
aagtggataccgaagatatgacactgtactctgataatacatccgtcacttctaaaatca
agtctgataaagcccttccgtcaaaaacgaagaagaagaggaataaaaataagaagaagc
cagcttctgtgaacattccatctacatcaagtagctatttgattgatactgaagaattca
aaagacctaaaactcctccactcgcaagaaagcaaaaaagtaagctgccaaaagaattac
cagaagtaccgaagaaatgcaaatttcgcataggtcttatggatttgtttgctattgaaa
cggactgcattgtgattccaagttacgagaagtatgactcgtttgtttctaagacgagga
cggaatttaaacactccaaagataatgttcaaattttcaatgaattttatcaatccgacg
attggaagcaaagaatggatatgcatgaagcaattgatttttcatggatacaaccgcaag
gatcgccacaaaatacactgaacactcttcacgtgaaagctcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCTTCTCGACACCATACAACAGA 634 9 281 Antisense
GATAATACATCCGTCACTTCTAAAA 73 423 373 Antisense
TCAAGTCTGATAAAGCCCTTCCGTC 98 633 398 Antisense
GAAGCCAGCTTCTGTGAACATTCCA 501 345 456 Antisense
TCAAAAGACCTAAAACTCCTCCACT 341 629 518 Antisense
ACTCCTCCACTCGCAAGAAAGCAAA 161 99 532 Antisense
AACGGACTGCATTGTGATTCCAAGT 406 143 639 Antisense
AGTATGACTCGTTTGTTTCTAAGAC 14 63 671 Antisense
TGGATACAACCGCAAGGATCGCCAC 619 549 805 Antisense
GGATCGCCACAAAATACACTGAACA 295 511 820 Antisense
GAACACTCTTCACGTGAAAGCTCGT 398 351 840 Antisense
Sequence Source Affymetrix Proprietary Database