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[187109_s_at]

Description C46H11.11 /REP_DB=WormBase Gene ID /WP=CE26360 /TR=Q9GYI8 /GB=AAF99890.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 23      4grp_highest_8_8 > 43      4grp_high_8_8 > 48      6grp_highest_nonorm > 90      6grp_total > 12      4grp_total > 55      6grp_highest_sub > 02      6grp_cgc > 62      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 192.7
(3)
P 		126.6
(-2.2)
P 		116.2
(-3)
P 		134.1
(-1.6)
P 		77
B 163.9
(3)
P 		72.5
(-3)
P 		122.4
(0.3)
P 		115.1
(-0.2)
P 		91
C 157.8
(2.9)
P 		126.5
(0.2)
P 		159.3
(3)
P 		88.3
(-3)
P 		71
avr 171.5
(3) 		108.5
(-3) 		132.6
(-0.7) 		112.5
(-2.6) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 174.3
(-0.9)
P 		275.8
(3)
P 		119.3
(-3)
P 		178.3
(-0.7)
P 		141.6
(-2.1)
P 		137.1
(-2.3)
P 		157
B 155.9
(-0.9)
P 		169
(0.2)
P 		180
(1.1)
P 		203
(3)
P 		141.2
(-2.1)
P 		130.1
(-3)
P 		73
C 211.9
(1.4)
P 		169.2
(-0.7)
P 		245.1
(3)
P 		166.8
(-0.8)
P 		211
(1.3)
P 		121.8
(-3)
P 		123
avr 180.7
(1.1) 		204.7
(3) 		181.5
(1.1) 		182.7
(1.2) 		164.6
(-0.2) 		129.7
(-3) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 70.2
(3)
P 		27.5
(-2.1)
P 		30.4
(-1.7)
P 		19.6
(-3)
P 		51
B 52.3
(3)
P 		17.9
(-3)
P 		28.4
(-1.2)
P 		24.5
(-1.8)
P 		34
C 52.2
(2.5)
P 		36.4
(0.2)
P 		55.5
(3)
P 		14.9
(-3)
P 		41
avr 58.2
(3) 		27.3
(-1.8) 		38.1
(-0.1) 		19.7
(-3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 32.1
(-2.5)
P 		98.1
(3)
P 		26
(-3)
P 		45.2
(-1.4)
P 		42.7
(-1.6)
P 		33.4
(-2.4)
P 		72
B 54.3
(1.6)
P 		56.3
(2.5)
P 		43.7
(-3)
P 		53.8
(1.4)
P 		57.4
(3)
P 		48.5
(-0.9)
P 		14
C 78.6
(3)
P 		51.6
(-0.6)
P 		62.4
(0.8)
P 		33.5
(-3)
P 		68.3
(1.6)
P 		40.8
(-2)
P 		45
avr 55
(0) 		68.7
(3) 		44
(-2.3) 		44.2
(-2.3) 		56.1
(0.3) 		40.9
(-3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187109_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2479
Sequence Type Exemplar sequence
Representative Public ID C46H11.11 NCBI
Target Description C46H11.11 /REP_DB=WormBase Gene ID /WP=CE26360 /TR=Q9GYI8 /GB=AAF99890.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170852(11), NM_170853(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170852 NCBI Caenorhabditis elegans Formin HOmology Domain family member (fhod-1) (fhod-1) mRNA, complete cds. 11/11 A 
NM_170853 NCBI Caenorhabditis elegans Formin HOmology Domain family member (fhod-1) (fhod-1) mRNA, complete cds. 11/11 None
C46H11.11b ENSEMBL cdna:known chromosome:CEL140:I:5058282:5068832:-1 gene:C46H11.11 11/11 A 
C46H11.11a ENSEMBL cdna:known chromosome:CEL140:I:5058623:5061927:-1 gene:C46H11.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5058622-5061921(-) 100.0 100.0
Public Domain and Genome References
Ensembl C46H11.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL16322 Hypothetical protein C46H11.11b [Caenorhabditis elegans] ref|NP_740839.1| Formin HOmology Domain family member (fhod-1) [Caenorhabditis elegans] 0.0
blast CAE65723 Hypothetical protein CBG10805 [Caenorhabditis briggsae] 0.0
blast AAF99890 Hypothetical protein C46H11.11a [Caenorhabditis elegans] ref|NP_740840.1| Formin HOmology Domain family member (fhod-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003104 EMBL-EBI Actin-binding FH2 2.0E-101
Pfam IPR003104 EMBL-EBI Actin-binding FH2 2.0E-101
Sequence
Target Sequence 
>C. ELEGANS:187109_S_AT
agaacagatggcactctttccttttgtattttggatattcagttgatgaaattccaaatc
agacaccaaatgacgtgttcaaaatggtaaccgaattctcgttggaataccgtaccacac
gagataagattctacaacaacgtaagcggttggcagagaagagagaacgcaataagacac
gtggaaagatatgggctcttgagggtagctcggcagagggtggagccggagatgcagcac
ctctgcgacgaagaaatcatggtccaggaactgtagcgcctgttcaaaactctcaacaaa
gacacgacgatatgtcgaaaatgttggcttcaatggcagatgacaacaattctttgagaa
gaagaccagctggatccaatggagtcaatgggcgcaactttggtggaagtgttaaagacc
tggtggacactgaatctccagaagatgagattttgaatggattggttaaagccgcaacat
tgcagactgatccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAACAGATGGCACTCTTTCCTTTT 402 73 1805 Antisense
GGCACTCTTTCCTTTTGTATTTTGG 250 535 1814 Antisense
TTCTCGTTGGAATACCGTACCACAC 442 683 1900 Antisense
ATGGGCTCTTGAGGGTAGCTCGGCA 122 49 1995 Antisense
GCAGCACCTCTGCGACGAAGAAATC 592 313 2038 Antisense
TCATGGTCCAGGAACTGTAGCGCCT 270 623 2061 Antisense
TGTAGCGCCTGTTCAAAACTCTCAA 522 559 2076 Antisense
AGACCAGCTGGATCCAATGGAGTCA 220 71 2167 Antisense
GAGTCAATGGGCGCAACTTTGGTGG 71 393 2186 Antisense
AAGACCTGGTGGACACTGAATCTCC 654 153 2219 Antisense
GCCGCAACATTGCAGACTGATCCAA 364 285 2275 Antisense
Sequence Source Affymetrix Proprietary Database