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[187108_at]

Description Y71A12B.10 /REP_DB=WormBase Gene ID /WP=CE26237 /TR=Q9GRV1 /GB=CAC14424.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 55      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 21
(3)
A 		3.6
(-3)
A 		4
(-2.9)
A 		6.6
(-2)
A 		17
B 3.5
(-3)
A 		5.9
(-2)
A 		17.3
(3)
A 		14.9
(2)
A 		14
C 21.3
(3)
A 		5.6
(-2.7)
A 		5.6
(-2.7)
A 		4.7
(-3)
A 		17
avr 15.3
(3) 		5
(-3) 		9
(-0.7) 		8.7
(-0.8) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 8.2
(-3)
A 		13.3
(-1.9)
A 		10.9
(-2.4)
A 		18.8
(-0.8)
A 		37.5
(3)
A 		8.1
(-3)
A 		29
B 6.1
(-2.2)
A 		3.8
(-2.7)
A 		14.5
(-0.7)
A 		34.5
(3)
A 		2.7
(-2.9)
A 		2
(-3)
A 		33
C 2.7
(-3)
A 		24.1
(3)
A 		22.7
(2.6)
A 		20.4
(2)
A 		16.8
(1)
A 		11.8
(-0.4)
A 		21
avr 5.7
(-3) 		13.7
(-0.5) 		16
(0.3) 		24.6
(3) 		19
(1.2) 		7.3
(-2.5) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 7.7
(3)
A 		0.8
(-3)
A 		1
(-2.8)
A 		1
(-2.8)
A 		7
B 1.1
(-3)
A 		1.5
(-2.2)
A 		4
(3)
A 		3.2
(1.3)
A 		3
C 7.1
(3)
A 		1.6
(-2.2)
A 		1.9
(-2)
A 		0.8
(-3)
A 		6
avr 5.3
(3) 		1.3
(-3) 		2.3
(-1.5) 		1.7
(-2.4) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.5
(-3)
A 		4.7
(-1)
A 		2.4
(-2.4)
A 		4.8
(-1)
A 		11.3
(3)
A 		2
(-2.7)
A 		10
B 2.1
(-2)
A 		1.3
(-2.6)
A 		3.5
(-1)
A 		9.1
(3)
A 		1.1
(-2.7)
A 		0.7
(-3)
A 		8
C 1
(-3)
A 		7.4
(3)
A 		5.8
(1.5)
A 		4.1
(-0.1)
A 		5.4
(1.1)
A 		3.9
(-0.3)
A 		6
avr 1.5
(-3) 		4.5
(1) 		3.9
(0.2) 		6
(3) 		5.9
(2.9) 		2.2
(-2.1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187108_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.606
Sequence Type Exemplar sequence
Representative Public ID Y71A12B.10 NCBI
Target Description Y71A12B.10 /REP_DB=WormBase Gene ID /WP=CE26237 /TR=Q9GRV1 /GB=CAC14424.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061035(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061035 NCBI Caenorhabditis elegans Y71A12B.10 (Y71A12B.10) mRNA, complete cds. 11/11 None
GENEFINDER00000038407 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13965317:13968558:1 11/11 None
Y71A12B.10 ENSEMBL cdna:known chromosome:CEL140:I:13965317:13968558:1 gene:Y71A12B.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038372 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13965247-13968489(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71A12B.10
Entrez Gene 190580 Entrez gene
SwissProt Q9GRV1 EMBL-EBI
WormBase CE26237 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC14424 Hypothetical protein Y71A12B.10 [Caenorhabditis elegans] ref|NP_493436.1| Y71A12B.10 [Caenorhabditis elegans] 0.0
blast CAC14424 Hypothetical protein Y71A12B.10 [Caenorhabditis elegans] ref|NP_493436.1| Y71A12B.10 [Caenorhabditis elegans] 1.0E-163
blast CAB02094 Hypothetical protein F25H2.6 [Caenorhabditis elegans] ref|NP_492762.1| F25H2.6 [Caenorhabditis elegans] 3.0E-47
blast CAB02094 Hypothetical protein F25H2.6 [Caenorhabditis elegans] ref|NP_492762.1| F25H2.6 [Caenorhabditis elegans] 2.0E-41
blast CAE58975 Hypothetical protein CBG02248 [Caenorhabditis briggsae] 4.0E-41
blast CAE58975 Hypothetical protein CBG02248 [Caenorhabditis briggsae] 3.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR000270 EMBL-EBI Octicosapeptide/Phox/Bem1p 2.6E-13
Pfam IPR000270 EMBL-EBI Octicosapeptide/Phox/Bem1p 2.6E-13
Sequence
Target Sequence 
>C. ELEGANS:187108_AT
ttcaaacgaagccaccacgagcacagttctgaaggctcgtcacgtcgactttgtgcacaa
gacgtcgattcaccacaccaacgacttgacgctcatcgacttggtgctcaatgtgcagtg
gcgtttggctctcccatccgacgcgaacttcgtcttgaagtacaaaaataaacaaggcga
tttggtgacactcgtcgtggatagcgacctcctgatggttcttcacacgtctggagccac
gttcgacgtgaccgtcgttgtcgactcaagaaatcgtgaaatcgacgttggaaagatcat
cgacgctctccgaaagagctttgaagcggctccacaatcgacagtaccttccgagaaaac
tccaccatcgcatactccatcgccacaatcgttgcgaggaccccccgccgccagtatcaa
gttctccacgaaactctctcctgctggcttttcatgcacccggatttcaagctcaagctc
aacaaaaacgccgaaaaataggatggttgaggcttttttaaagaaatttcagcctcgaca
ctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAAACGAAGCCACCACGAGCACA 568 685 753 Antisense
CTCGTCACGTCGACTTTGTGCACAA 79 233 788 Antisense
TGCACAAGACGTCGATTCACCACAC 446 575 806 Antisense
CCATCCGACGCGAACTTCGTCTTGA 249 259 886 Antisense
TGGAAAGATCATCGACGCTCTCCGA 584 547 1041 Antisense
GCTTTGAAGCGGCTCCACAATCGAC 103 297 1070 Antisense
GTACCTTCCGAGAAAACTCCACCAT 37 459 1096 Antisense
TACTCCATCGCCACAATCGTTGCGA 477 643 1125 Antisense
ATCAAGTTCTCCACGAAACTCTCTC 214 27 1168 Antisense
TCATGCACCCGGATTTCAAGCTCAA 432 621 1204 Antisense
AAAGAAATTTCAGCCTCGACACTCT 479 121 1272 Antisense
Sequence Source Affymetrix Proprietary Database