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[187107_s_at]

Description Y106G6H.10 /REP_DB=WormBase Gene ID /WP=CE20420 /TR=Q9U2Z7 /GB=CAB63340.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 12.7
(-2.3)
A 		45.8
(0)
A 		2
(-3)
A 		89.4
(3)
M 		87
B 50.1
(3)
P 		15.2
(-1.7)
A 		5.4
(-3)
A 		39.5
(1.6)
A 		45
C 31.2
(-1.6)
M 		22.5
(-2)
A 		1.1
(-3)
A 		134.2
(3)
P 		133
avr 31.3
(-1) 		27.8
(-1.2) 		2.8
(-3) 		87.7
(3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 22.6
(-0.9)
A 		25.7
(-0.6)
A 		37
(0.6)
A 		2.3
(-3)
A 		54.5
(2.4)
P 		60.4
(3)
P 		58
B 14.7
(-1.8)
A 		25.2
(0.3)
A 		14.2
(-1.9)
A 		8.6
(-3)
A 		32.6
(1.8)
P 		38.7
(3)
P 		30
C 17.2
(-2.9)
A 		26.5
(-1.8)
A 		22.5
(-2.3)
A 		16.6
(-3)
A 		21.4
(-2.4)
A 		64.7
(3)
P 		48
avr 18.2
(-1.8) 		25.8
(-0.8) 		24.6
(-1) 		9.2
(-3) 		36.2
(0.6) 		54.6
(3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 4.6
(-1)
A 		9.9
(1.5)
A 		0.5
(-3)
A 		13.1
(3)
M 		13
B 16
(3)
P 		3.8
(-1.9)
A 		1.2
(-3)
A 		8.4
(-0.1)
A 		15
C 10.3
(-0.3)
M 		6.5
(-1.4)
A 		0.4
(-3)
A 		22.6
(3)
P 		22
avr 10.3
(1.1) 		6.7
(-0.4) 		0.7
(-3) 		14.7
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 4.2
(-1.6)
A 		9.1
(0.2)
A 		8.1
(-0.2)
A 		0.6
(-3)
A 		16.4
(3)
P 		14.7
(2.4)
P 		16
B 5.1
(-1.6)
A 		8.4
(0)
A 		3.4
(-2.5)
A 		2.3
(-3)
A 		13.2
(2.4)
P 		14.4
(3)
P 		12
C 6.4
(-2)
A 		8.1
(-1.4)
A 		5.7
(-2.2)
A 		3.3
(-3)
A 		6.9
(-1.8)
A 		21.7
(3)
P 		18
avr 5.2
(-1.7) 		8.5
(-0.4) 		5.7
(-1.5) 		2.1
(-3) 		12.2
(1.1) 		16.9
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187107_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1711
Sequence Type Exemplar sequence
Representative Public ID Y106G6H.10 NCBI
Target Description Y106G6H.10 /REP_DB=WormBase Gene ID /WP=CE20420 /TR=Q9U2Z7 /GB=CAB63340.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060333(11), NM_060334(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060333 NCBI Caenorhabditis elegans Y106G6H.9 (Y106G6H.9) mRNA, complete cds. 11/11 A 
NM_060334 NCBI Caenorhabditis elegans Y106G6H.10 (Y106G6H.10) mRNA, complete cds. 11/11 None
Y106G6H.9 ENSEMBL cdna:known chromosome:CEL140:I:10462537:10463755:-1 gene:Y106G6H.9 11/11 A 
Y106G6H.10 ENSEMBL cdna:known chromosome:CEL140:I:10465951:10466848:1 gene:Y106G6H.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000001719 6/11 Cross Hyb Matching Probes None
GENEFINDER00000001713 8/11 Cross Hyb Matching Probes None
F59C6.10 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10465881-10466779(+) 100.0 100.0
chrI:10462791-10463686(-) 99.46 99.46
Public Domain and Genome References
Gene Title

Ensembl Y106G6H.9
Y106G6H.10
Entrez Gene 190927 Entrez gene
190928 Entrez gene
SwissProt Q9U2Z7 EMBL-EBI
Q9U2Z8 EMBL-EBI
WormBase CE20420 Wormbase
CE20419 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63339 Hypothetical protein Y106G6H.9 [Caenorhabditis elegans] ref|NP_492734.1| Y106G6H.9 [Caenorhabditis elegans] 1.0E-170
blast CAB63340 Hypothetical protein Y106G6H.10 [Caenorhabditis elegans] ref|NP_492735.1| Y106G6H.10 [Caenorhabditis elegans] 1.0E-103
blast CAB63339 Hypothetical protein Y106G6H.9 [Caenorhabditis elegans] ref|NP_492734.1| Y106G6H.9 [Caenorhabditis elegans] 1.0E-103
blast AAD14714 Hypothetical protein F46E10.3 [Caenorhabditis elegans] ref|NP_504657.1| F46E10.3 [Caenorhabditis elegans] 1.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.0E-6
Sequence
Target Sequence 
>C. ELEGANS:187107_S_AT
atattccaagtttcctctacttcaacttccttccaagactattcaaaatgttttgagtat
tttgagtccatttgaattaatagatgtttcaaaatcaagtacgagagtgaagagaatagt
caaagagtttacaaggactcaacgcaaaggatgttacacacttagtgtagttgctaatat
cgtcgcttctgtttttattgaaaaaaaagatggtagactatatgaacaaaaatatgaccc
tagaacatactactcaccacatgacatgacgatctatggtgataccgaaatcaagattag
gagtatctattcaaacgatccagtgaatgaatggattatttgtgctgagtattatatgga
tattctaaactgccaaatcaattttttccgtgaactggcagatacgaaaaaaattttctt
cgatgttattgttcacgagaaatgtgatgaacagttaataatcacttctaatagttttct
tgtcgagcacgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTCCAAGTTTCCTCTACTTCAA 420 19 36 Antisense
GTAGTTGCTAATATCGTCGCTTCTG 364 455 202 Antisense
ATATCGTCGCTTCTGTTTTTATTGA 145 21 212 Antisense
ATGACCCTAGAACATACTACTCACC 380 43 269 Antisense
TACTACTCACCACATGACATGACGA 483 645 283 Antisense
GACATGACGATCTATGGTGATACCG 528 369 298 Antisense
GAGTATCTATTCAAACGATCCAGTG 124 399 336 Antisense
TAAACTGCCAAATCAATTTTTTCCG 227 607 401 Antisense
ATTTTTTCCGTGAACTGGCAGATAC 235 15 416 Antisense
AATTTTCTTCGATGTTATTGTTCAC 169 173 447 Antisense
TAATAGTTTTCTTGTCGAGCACGCC 373 635 504 Antisense
Sequence Source Affymetrix Proprietary Database