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[187106_s_at]

Description Y48B6A.13B /REP_DB=WormBase Gene ID /WP=CE22129 /TR=Q9U294 /GB=CAB54454.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 58      6grp_highest_nonorm > 92      6grp_total > 59      4grp_total > 58      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 385
1 2 3 4 range
A 335.4
(-0.9)
P 		507.1
(3)
P 		484.9
(2.5)
P 		244.3
(-3)
A 		263
B 368.4
(1.9)
P 		391.7
(2.4)
P 		416.7
(3)
P 		158.4
(-3)
A 		258
C 249.7
(-1.8)
M 		476.4
(1.9)
P 		543.2
(3)
P 		179.5
(-3)
A 		364
avr 317.8
(-0.4) 		458.4
(2.5) 		481.6
(3) 		194.1
(-3) 		288

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 314
1 2 3 4 5 6 range
A 394.3
(3)
P 		297.8
(-0.4)
P 		222.4
(-3)
P 		236.2
(-2.5)
P 		338
(1)
P 		379.1
(2.5)
P 		172
B 403.7
(0.9)
P 		301.6
(-1.1)
P 		302.3
(-1.1)
P 		201.4
(-3)
P 		344.9
(-0.3)
P 		514.9
(3)
P 		314
C 269.4
(-1.5)
P 		376.2
(1.7)
P 		286.8
(-1)
P 		221.9
(-3)
P 		290.3
(-0.9)
P 		417.9
(3)
P 		196
avr 355.8
(0.8) 		325.2
(-0.1) 		270.5
(-1.6) 		219.8
(-3) 		324.4
(-0.1) 		437.3
(3) 		218
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 122.1
(2.7)
P 		110.1
(1.9)
P 		126.8
(3)
P 		35.8
(-3)
A 		91
B 117.5
(3)
P 		96.7
(1.5)
P 		96.6
(1.5)
P 		33.8
(-3)
A 		84
C 82.6
(-1)
M 		137
(1)
P 		189.3
(3)
P 		30.3
(-3)
A 		159
avr 107.4
(1.3) 		114.6
(1.7) 		137.6
(3) 		33.3
(-3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 147
1 2 3 4 5 6 range
A 72.7
(-0.5)
P 		105.9
(3)
P 		48.4
(-3)
P 		59.9
(-1.8)
P 		102
(2.6)
P 		92.3
(1.6)
P 		58
B 140.5
(0.8)
P 		100.4
(-1)
P 		73.4
(-2.1)
P 		53.3
(-3)
P 		140.1
(0.8)
P 		192
(3)
P 		139
C 99.9
(0.5)
P 		114.8
(1.4)
P 		73
(-1.2)
P 		44.6
(-3)
P 		93.9
(0.1)
P 		139.9
(3)
P 		95
avr 104.4
(0.5) 		107
(0.7) 		64.9
(-2.2) 		52.6
(-3) 		112
(1) 		141.4
(3) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187106_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2782
Sequence Type Exemplar sequence
Representative Public ID Y48B6A.13B NCBI
Target Description Y48B6A.13B /REP_DB=WormBase Gene ID /WP=CE22129 /TR=Q9U294 /GB=CAB54454.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064566(11), NM_064565(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064566 NCBI Caenorhabditis elegans Y48B6A.13a (Y48B6A.13) mRNA, complete cds. 11/11 None
NM_064565 NCBI Caenorhabditis elegans Y48B6A.13b (Y48B6A.13) mRNA, complete cds. 11/11 None
SNAP00000022967 ENSEMBL cdna:SNAP chromosome:CEL140:II:14220913:14226150:-1 11/11 None
GENEFINDER00000022973 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14220913:14226150:-1 11/11 None
Y48B6A.13a ENSEMBL cdna:known chromosome:CEL140:II:14220847:14226150:-1 gene:Y48B6A.13 11/11 None
Y48B6A.13b.1 ENSEMBL cdna:known chromosome:CEL140:II:14220913:14226168:-1 gene:Y48B6A.13 11/11 None
Y48B6A.13b.2 ENSEMBL cdna:known chromosome:CEL140:II:14220913:14226166:-1 gene:Y48B6A.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14220909-14226147(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y48B6A.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54454 Hypothetical protein Y48B6A.13b [Caenorhabditis elegans] ref|NP_496966.1| Y48B6A.13b [Caenorhabditis elegans] 0.0
blast CAB54447 Hypothetical protein Y48B6A.13a [Caenorhabditis elegans] ref|NP_496967.1| Y48B6A.13a [Caenorhabditis elegans] 1.0E-170
blast CAB54454 Hypothetical protein Y48B6A.13b [Caenorhabditis elegans] ref|NP_496966.1| Y48B6A.13b [Caenorhabditis elegans] 1.0E-163
blast CAB54447 Hypothetical protein Y48B6A.13a [Caenorhabditis elegans] ref|NP_496967.1| Y48B6A.13a [Caenorhabditis elegans] 1.0E-163
Protein Domains
Database ID Description E-Value
Pfam IPR006204 EMBL-EBI GHMP kinase 9.2E-38
Pfam IPR006204 EMBL-EBI GHMP kinase 9.2E-38
Sequence
Target Sequence 
>C. ELEGANS:187106_S_AT
gccgccaactgggaagatctctactgcataattctagtcttcgacgatggccgcaaaaaa
gtgggctccagtgaaggaatgcgaagatcacgagaaacatctcaacttctcaagcatcgc
attgaatcgatagttcctcaacgaatccaacaaatccaggaagcgtatacttcacggaat
ttcgagcagctcgcacgcgtcatcatggccgatagcaatcaattccacgcggtttgcatg
gattctacgccgccaattcggtatttgaatgaagcatcgtggcagttaatcgacacagtt
gaagagtttaatattggaggaattcgagctgcttatacatttgacgccggtccgaatgcg
tgtgttattgtgcaaaaagaaaatgcgtctcaattcctgaaagctgtgctccaaactatc
caagtcccttcagaagatctacaagtcattggaaaagagctcgccgagcaatttgacgtc
ccagcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGCCAACTGGGAAGATCTCTACT 372 285 598 Antisense
TTCTAGTCTTCGACGATGGCCGCAA 173 689 629 Antisense
GATAGTTCCTCAACGAATCCAACAA 372 425 726 Antisense
GAATTTCGAGCAGCTCGCACGCGTC 339 325 774 Antisense
GGCCGATAGCAATCAATTCCACGCG 59 543 804 Antisense
CGGTTTGCATGGATTCTACGCCGCC 646 241 827 Antisense
TCTACGCCGCCAATTCGGTATTTGA 86 615 841 Antisense
GAGCTGCTTATACATTTGACGCCGG 254 387 923 Antisense
AATGCGTCTCAATTCCTGAAAGCTG 483 165 979 Antisense
TCCAAACTATCCAAGTCCCTTCAGA 118 587 1007 Antisense
CGCCGAGCAATTTGACGTCCCAGCG 527 255 1059 Antisense
Sequence Source Affymetrix Proprietary Database