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[187105_at]

Description W10G11.13 /REP_DB=WormBase Gene ID /WP=CE14824 /TR=O44911 /GB=AAG24220.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 42      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 3.9
(-2.9)
A 		8.8
(-1.5)
A 		24.8
(3)
A 		3.4
(-3)
A 		21
B 1.7
(-0.3)
A 		1.9
(1)
A 		1.3
(-3)
A 		2.2
(3)
A 		1
C 3.4
(-2.9)
A 		66.8
(3)
A 		2
(-3)
A 		18.5
(-1.5)
A 		65
avr 3
(-3) 		25.8
(3) 		9.4
(-1.3) 		8
(-1.7) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 10.6
(-0.2)
A 		8.7
(-0.8)
A 		2
(-2.8)
A 		1.8
(-2.9)
A 		21.3
(3)
A 		1.4
(-3)
A 		20
B 3
(-2.7)
A 		1.4
(-3)
A 		39
(3)
A 		4.3
(-2.5)
A 		3.9
(-2.6)
A 		1.1
(-3)
A 		38
C 2.4
(-2.8)
A 		1.7
(-2.9)
A 		1.5
(-3)
A 		24.3
(3)
A 		3.8
(-2.4)
A 		7.5
(-1.4)
A 		23
avr 5.3
(-1.9) 		3.9
(-2.7) 		14.2
(3) 		10.1
(0.7) 		9.7
(0.5) 		3.3
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 1.4
(-2.1)
A 		1.9
(-1.6)
A 		6.5
(3)
A 		0.5
(-3)
A 		6
B 0.5
(3)
A 		0.5
(3)
A 		0.3
(-3)
A 		0.5
(3)
A 		0
C 1.1
(-2.9)
A 		19.2
(3)
A 		0.7
(-3)
A 		3.1
(-2.2)
A 		19
avr 1
(-3) 		7.2
(3) 		2.5
(-1.5) 		1.4
(-2.6) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2
(-1.3)
A 		3.1
(-0.2)
A 		0.4
(-2.9)
A 		0.5
(-2.8)
A 		6.4
(3)
A 		0.3
(-3)
A 		6
B 1
(-2.6)
A 		0.5
(-2.9)
A 		9.5
(3)
A 		1.1
(-2.5)
A 		1.6
(-2.2)
A 		0.4
(-3)
A 		9
C 0.9
(-2.3)
A 		0.5
(-2.9)
A 		0.4
(-3)
A 		4.9
(3)
A 		1.2
(-1.9)
A 		2.5
(-0.2)
A 		5
avr 1.3
(-2.5) 		1.4
(-2.2) 		3.4
(3) 		2.2
(-0.1) 		3.1
(2.2) 		1.1
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187105_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5026
Sequence Type Exemplar sequence
Representative Public ID W10G11.13 NCBI
Target Description W10G11.13 /REP_DB=WormBase Gene ID /WP=CE14824 /TR=O44911 /GB=AAG24220.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062184(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062184 NCBI Caenorhabditis elegans W10G11.13 (W10G11.13) mRNA, complete cds. 11/11 None
SNAP00000013266 ENSEMBL cdna:SNAP chromosome:CEL140:II:3577039:3578104:1 11/11 None
GENEFINDER00000013283 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3577039:3578104:1 11/11 None
W10G11.13 ENSEMBL cdna:known chromosome:CEL140:II:3577039:3578104:1 gene:W10G11.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3577037-3578103(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W10G11.13
Entrez Gene 173706 Entrez gene
SwissProt O44911 EMBL-EBI
WormBase CE14824 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24220 Hypothetical protein W10G11.13 [Caenorhabditis elegans] ref|NP_494585.1| W10G11.13 [Caenorhabditis elegans] 7.0E-98
blast AAG24221 Hypothetical protein W10G11.14 [Caenorhabditis elegans] ref|NP_494583.1| W10G11.14 [Caenorhabditis elegans] 7.0E-66
blast AAG24210 Hypothetical protein W10G11.15 [Caenorhabditis elegans] ref|NP_494582.1| W10G11.15 [Caenorhabditis elegans] 7.0E-60
Sequence
Target Sequence 
>C. ELEGANS:187105_AT
gctccgcagattgcacagtagcctacaaatcaatattgaatgctcaactgacggaaagtt
tggcgaatggatgtgagcctggctggaagttttttaaccggccatccggaggatggtgca
tgaaggtgatcaatgagtataagggagcaaaagctgaagcagagaaggagtgtaaagccg
tgggatctacactttctggaattcagaataaggcagaggcttcgtatattcaatctgctc
tcctcgcccaacttccagcttcagtgaacagtggctctctatgggttggaattcagagag
tcaaaaagtgcttggcacaaaaactatcagccacatgctcagcccgcaccgccttccaat
acactgatggatcagtgaccggcactgacggatttgtcttccagaaggggcagccagata
acatgtacggcaaacagaactgtgcgattttcctggcctccaggacacctactattgtga
gtggaagctttttcgctggaacactgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCCGCAGATTGCACAGTAGCCTA 454 299 71 Antisense
GTGAGCCTGGCTGGAAGTTTTTTAA 208 483 143 Antisense
AAAGCCGTGGGATCTACACTTTCTG 664 121 244 Antisense
GGCTTCGTATATTCAATCTGCTCTC 615 537 288 Antisense
GCTTCAGTGAACAGTGGCTCTCTAT 306 305 328 Antisense
GTGGCTCTCTATGGGTTGGAATTCA 531 491 341 Antisense
CACCGCCTTCCAATACACTGATGGA 407 201 417 Antisense
GGCACTGACGGATTTGTCTTCCAGA 467 535 451 Antisense
CAGAACTGTGCGATTTTCCTGGCCT 312 205 505 Antisense
CCTCCAGGACACCTACTATTGTGAG 77 267 527 Antisense
GGAAGCTTTTTCGCTGGAACACTGG 641 529 553 Antisense
Sequence Source Affymetrix Proprietary Database