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[187104_s_at]

Description Y111B2A.17 /REP_DB=WormBase Gene ID /WP=CE24138 /TR=Q9NEW7 /GB=CAC35846.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 79      4grp_high_8_8 > 59      6grp_highest_nonorm > 82      6grp_total > 79      4grp_total > 60      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 287
1 2 3 4 range
A 532.3
(3)
P 		486.4
(1.8)
P 		493
(2)
P 		297.4
(-3)
M 		235
B 535.3
(2.4)
P 		512.6
(1.9)
P 		562.8
(3)
P 		296.7
(-3)
P 		266
C 496.2
(1.9)
P 		457.5
(1)
P 		546.9
(3)
P 		276.2
(-3)
P 		271
avr 521.3
(2.7) 		485.5
(1.8) 		534.2
(3) 		290.1
(-3) 		244

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 400
1 2 3 4 5 6 range
A 304.1
(-1.7)
P 		367.7
(0.2)
P 		302.2
(-1.8)
P 		261.4
(-3)
P 		406.5
(1.4)
P 		459.1
(3)
P 		198
B 349.8
(-2.1)
P 		391.6
(-1.4)
P 		305.6
(-2.8)
P 		295
(-3)
P 		425.1
(-0.8)
P 		655.4
(3)
P 		360
C 271.1
(-2.7)
P 		362.1
(-0.8)
P 		255.7
(-3)
P 		301.6
(-2)
P 		413.7
(0.3)
P 		544
(3)
P 		288
avr 308.3
(-2.5) 		373.8
(-1) 		287.8
(-3) 		286
(-3) 		415.1
(-0.1) 		552.8
(3) 		267
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 150
1 2 3 4 range
A 193.8
(3)
P 		105.6
(-0.5)
P 		128.9
(0.4)
P 		43.5
(-3)
M 		150
B 170.7
(3)
P 		126.6
(0.5)
P 		130.4
(0.8)
P 		63.2
(-3)
P 		108
C 164.2
(1.9)
P 		131.5
(0.5)
P 		190.6
(3)
P 		46.6
(-3)
P 		144
avr 176.2
(3) 		121.2
(0.4) 		150
(1.7) 		51.1
(-3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 188
1 2 3 4 5 6 range
A 56.1
(-3)
P 		130.8
(3)
P 		65.8
(-2.2)
P 		66.3
(-2.2)
P 		122.7
(2.3)
P 		111.8
(1.5)
P 		75
B 121.7
(-1.3)
P 		130.4
(-1)
P 		74.2
(-3)
P 		78.1
(-2.9)
P 		172.7
(0.5)
P 		244.4
(3)
P 		170
C 100.5
(-1)
P 		110.5
(-0.5)
P 		65.1
(-2.8)
P 		60.7
(-3)
P 		133.9
(0.6)
P 		182.1
(3)
P 		121
avr 92.8
(-1.7) 		123.9
(0) 		68.4
(-3) 		68.4
(-3) 		143.1
(1) 		179.4
(3) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187104_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7151
Sequence Type Exemplar sequence
Representative Public ID Y111B2A.17 NCBI
Target Description Y111B2A.17 /REP_DB=WormBase Gene ID /WP=CE24138 /TR=Q9NEW7 /GB=CAC35846.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067247(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067247 NCBI Caenorhabditis elegans Y111B2A.17 (Y111B2A.17) mRNA, complete cds. 11/11 A 
SNAP00000006165 ENSEMBL cdna:SNAP chromosome:CEL140:III:12665530:12686041:1 11/11 None
GENEFINDER00000006282 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12673559:12686041:1 11/11 None
Y111B2A.17 ENSEMBL cdna:known chromosome:CEL140:III:12673552:12686041:1 gene:Y111B2A.17 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12673554-12686037(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y111B2A.17
Entrez Gene 176687 Entrez gene
SwissProt Q9NEW7 EMBL-EBI
WormBase CE34502 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:262395_AT transducin family protein / WD-40 repeat family protein at
CANINE:1605277_AT similar to elongator protein 2 cfa
CANINE:1593621_S_AT similar to elongator protein 2 cfa
CANINE:1587509_AT similar to elongator protein 2 cfa
CANINE_2:CFA.10492.1.A1_AT similar to elongator protein 2 cfa
CANINE_2:CFA.11117.1.A1_AT similar to elongator protein 2 cfa
CANINE_2:CFA.17346.1.S1_S_AT similar to elongator protein 2 cfa
CANINE_2:CFAAFFX.27310.1.S1_S_AT similar to elongator protein 2 cfa
DROSOPHILA_2:1627110_AT dm
DROSGENOME1:141253_AT dm
CHICKEN:GGA.11451.1.S1_S_AT similar to elongator protein 2; signal transducer and activator of transcription interacting protein 1 gga
CHICKEN:GGAAFFX.24140.1.S1_S_AT similar to elongator protein 2; signal transducer and activator of transcription interacting protein 1 gga
HU35KSUBA:RC_AA598412_AT signal transducer and activator of transcription 3 interacting protein 1 hs
HU35KSUBB:RC_R07637_AT signal transducer and activator of transcription 3 interacting protein 1 hs
HU35KSUBD:RC_W23625_S_AT signal transducer and activator of transcription 3 interacting protein 1 hs
U133_X3P:HS.8739.0.S1_3P_A_AT signal transducer and activator of transcription 3 interacting protein 1 hs
HG-U133_PLUS_2:231713_S_AT signal transducer and activator of transcription 3 interacting protein 1 hs
HG-U133B:231713_S_AT signal transducer and activator of transcription 3 interacting protein 1 hs
HG-U95B:55557_AT signal transducer and activator of transcription 3 interacting protein 1 hs
HU35KSUBB:RC_N58354_AT Signal transducer and activator of transcription 3 interacting protein 1 hs
HU35KSUBC:RC_N92706_AT Signal transducer and activator of transcription 3 interacting protein 1 hs
U133_X3P:HS.222654.0.S1_3P_AT Signal transducer and activator of transcription 3 interacting protein 1 hs
U133_X3P:HS.170261.0.A1_3P_AT Signal transducer and activator of transcription 3 interacting protein 1 hs
U133_X3P:HS.134981.0.A1_3P_AT Signal transducer and activator of transcription 3 interacting protein 1 hs
HG-U133_PLUS_2:230178_S_AT Signal transducer and activator of transcription 3 interacting protein 1 hs
HG-U133B:230178_S_AT Signal transducer and activator of transcription 3 interacting protein 1 hs
HG-U133_PLUS_2:238709_AT Signal transducer and activator of transcription 3 interacting protein 1 hs
HG-U133B:238709_AT Signal transducer and activator of transcription 3 interacting protein 1 hs
HG-U133_PLUS_2:243735_AT Signal transducer and activator of transcription 3 interacting protein 1 hs
HG-U133B:243735_AT Signal transducer and activator of transcription 3 interacting protein 1 hs
HG-U95B:44934_AT Signal transducer and activator of transcription 3 interacting protein 1 hs
HG-U95B:59490_AT Signal transducer and activator of transcription 3 interacting protein 1 hs
HG-U95E:75027_AT Signal transducer and activator of transcription 3 interacting protein 1 hs
HG-U133_PLUS_2:235623_AT Signal transducer and activator of transcription 3 interacting protein 1 hs
HG-U133B:235623_AT Signal transducer and activator of transcription 3 interacting protein 1 hs
HG-U95E:82656_AT Signal transducer and activator of transcription 3 interacting protein 1 hs
U133_X3P:HS.144758.0.A1_3P_AT Signal transducer and activator of transcription 3 interacting protein 1 hs
MOE430A:1415774_AT signal transducer and activator of transcription interacting protein 1 mm
MOUSE430A_2:1415774_AT signal transducer and activator of transcription interacting protein 1 mm
MOUSE430_2:1415774_AT signal transducer and activator of transcription interacting protein 1 mm
MG-U74AV2:95513_AT signal transducer and activator of transcription interacting protein 1 mm
MOE430A:1438179_S_AT Signal transducer and activator of transcription interacting protein 1, mRNA (cDNA clone MGC:18889 IMAGE:4239056) mm
MOUSE430A_2:1438179_S_AT Signal transducer and activator of transcription interacting protein 1, mRNA (cDNA clone MGC:18889 IMAGE:4239056) mm
MOUSE430_2:1438179_S_AT Signal transducer and activator of transcription interacting protein 1, mRNA (cDNA clone MGC:18889 IMAGE:4239056) mm
MU19KSUBA:TC19461_AT Signal transducer and activator of transcription interacting protein 1, mRNA (cDNA clone MGC:18889 IMAGE:4239056) mm
MU19KSUBA:TC19461_G_AT Signal transducer and activator of transcription interacting protein 1, mRNA (cDNA clone MGC:18889 IMAGE:4239056) mm
RG-U34C:RC_AI236529_AT Signal transducer and activator of transcription interacting protein 1 (predicted) rn
RAE230A:1367533_AT Signal transducer and activator of transcription interacting protein 1 (predicted) rn
RAE230B:1367533_AT Signal transducer and activator of transcription interacting protein 1 (predicted) rn
RAT230_2:1367533_AT Signal transducer and activator of transcription interacting protein 1 (predicted) rn
YEAST_2:1778092_AT Elongator protein, part of the six-subunit RNA polymerase II Elongator histone acetyltransferase complex; target of Kluyveromyces lactis zymocin Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC35846 Hypothetical protein Y111B2A.17 [Caenorhabditis elegans] ref|NP_499648.3| Y111B2A.17 [Caenorhabditis elegans] 0.0
blast CAE60050 Hypothetical protein CBG03562 [Caenorhabditis briggsae] 0.0
blast CAE60050 Hypothetical protein CBG03562 [Caenorhabditis briggsae] 1.0E-163
blast AAF58765 CG11887-PA [Drosophila melanogaster] gb|AAK93443.1| LD47515p [Drosophila melanogaster] ref|NP_610600.1| CG11887-PA [Drosophila melanogaster] 2.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.0E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.6E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.5E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.036
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.5E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.2E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.13
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.0E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.6E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.5E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.036
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.5E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.2E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.13
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.2E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.6E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.5E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.036
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.5E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.2E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.13
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000006282 1 167-189
Sequence
Target Sequence 
>C. ELEGANS:187104_S_AT
agctccaaaagcgacagttaaactcgatgagccggtcactgcgattgctgctgtttcaaa
ggatgttatagttgcaggactacaaaccggagagctcattgttcttcgatttgattctga
aggacttcacgtgatcgaaaaaattggagccaaccgaattcccatcgattctgcagtttt
gcgtttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTCCAAAAGCGACAGTTAAACTC 461 81 2316 Antisense
TAAACTCGATGAGCCGGTCACTGCG 187 641 2334 Antisense
TCACTGCGATTGCTGCTGTTTCAAA 13 627 2351 Antisense
GATTGCTGCTGTTTCAAAGGATGTT 372 433 2358 Antisense
GCAGGACTACAAACCGGAGAGCTCA 104 311 2389 Antisense
ACCGGAGAGCTCATTGTTCTTCGAT 599 87 2401 Antisense
GCTCATTGTTCTTCGATTTGATTCT 415 301 2409 Antisense
TCGATTTGATTCTGAAGGACTTCAC 513 603 2421 Antisense
CTGAAGGACTTCACGTGATCGAAAA 668 237 2432 Antisense
CGAATTCCCATCGATTCTGCAGTTT 469 253 2470 Antisense
CATCGATTCTGCAGTTTTGCGTTTG 423 211 2478 Antisense
Sequence Source Affymetrix Proprietary Database