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[187103_s_at]

Description Y113G7B.11 /REP_DB=WormBase Gene ID /WP=CE23292 /TR=Q9U2X3 /GB=CAB54332.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 07      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 70      6grp_total > 14      4grp_total > 29      6grp_highest_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 336
1 2 3 4 range
A 458.7
(1.4)
P 		347.4
(-0.5)
P 		209.8
(-3)
P 		546.2
(3)
P 		336
B 514
(3)
P 		333.3
(-0.7)
P 		218.7
(-3)
P 		285.6
(-1.6)
P 		295
C 475.9
(3)
P 		368
(0.3)
P 		235.7
(-3)
P 		436.2
(2)
P 		240
avr 482.9
(3) 		349.6
(-0.1) 		221.4
(-3) 		422.7
(1.6) 		262

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 331
1 2 3 4 5 6 range
A 532
(3)
P 		337.4
(-0.5)
P 		289.9
(-1.4)
P 		303.9
(-1.1)
P 		201.3
(-3)
P 		211.8
(-2.8)
P 		331
B 469.4
(3)
P 		355.1
(0.3)
P 		264.9
(-1.9)
P 		254.8
(-2.1)
P 		258.8
(-2)
P 		216.6
(-3)
P 		253
C 416.5
(3)
P 		359.1
(1.3)
P 		284.9
(-0.9)
P 		388.9
(2.2)
P 		212.5
(-3)
P 		243.5
(-2.1)
P 		204
avr 472.6
(3) 		350.5
(0.1) 		279.9
(-1.7) 		315.9
(-0.8) 		224.2
(-3) 		224
(-3) 		249
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 167
(3)
P 		75.4
(-1.9)
P 		54.8
(-3)
P 		80
(-1.7)
P 		112
B 163.9
(3)
P 		82.3
(-1.3)
P 		50.7
(-3)
P 		60.9
(-2.5)
P 		113
C 157.5
(3)
P 		105.8
(-0.7)
P 		82.2
(-2.4)
P 		73.6
(-3)
P 		84
avr 162.8
(3) 		87.8
(-1.5) 		62.6
(-3) 		71.5
(-2.5) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 98.1
(1.1)
P 		120
(3)
P 		63.1
(-2)
P 		77.1
(-0.8)
P 		60.7
(-2.2)
P 		51.6
(-3)
P 		68
B 163.3
(3)
P 		118.2
(0.3)
P 		64.3
(-3)
P 		67.5
(-2.8)
P 		105.1
(-0.5)
P 		80.8
(-2)
P 		99
C 154.4
(3)
P 		109.6
(-0.1)
P 		72.5
(-2.7)
P 		78.2
(-2.3)
P 		68.8
(-3)
P 		81.5
(-2.1)
P 		86
avr 138.6
(3) 		115.9
(1.1) 		66.6
(-3) 		74.3
(-2.4) 		78.2
(-2) 		71.3
(-2.6) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187103_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13028
Sequence Type Exemplar sequence
Representative Public ID Y113G7B.11 NCBI
Target Description Y113G7B.11 /REP_DB=WormBase Gene ID /WP=CE23292 /TR=Q9U2X3 /GB=CAB54332.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075501(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075501 NCBI Caenorhabditis elegans Y113G7B.11 (Y113G7B.11) mRNA, complete cds. 11/11 None
GENEFINDER00000024727 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20206798:20213293:-1 10/11 None
Y113G7B.11 ENSEMBL cdna:known chromosome:CEL140:V:20211880:20213293:-1 gene:Y113G7B.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20212004-20213293(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y113G7B.11
Entrez Gene 180322 Entrez gene
SwissProt Q9U2X3 EMBL-EBI
WormBase CE23292 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB76739 Hypothetical protein Y113G7B.12 [Caenorhabditis elegans] ref|NP_507901.1| Y113G7B.12 [Caenorhabditis elegans] 0.0
blast CAB54332 Hypothetical protein Y113G7B.11 [Caenorhabditis elegans] ref|NP_507902.1| Y113G7B.11 [Caenorhabditis elegans] 2.0E-84
blast CAB54332 Hypothetical protein Y113G7B.11 [Caenorhabditis elegans] ref|NP_507902.1| Y113G7B.11 [Caenorhabditis elegans] 3.0E-71
blast CAE61675 Hypothetical protein CBG05618 [Caenorhabditis briggsae] 1.0E-59
blast CAE61675 Hypothetical protein CBG05618 [Caenorhabditis briggsae] 2.0E-52
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 4.4E-8
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 5.7E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507902.1 1 140-157
Y113G7B.11 1 140-157
Sequence
Target Sequence 
>C. ELEGANS:187103_S_AT
tcaggacactcccaatatgctacacaatgtacatcacaatcctattgcgtctcgatcaca
tcaaaaaatggccccgtacagcgaagttgtgacggtaactcaatttcccagatctcactg
tgctcaatgtatgcaatgcatggaattcctagaacaatccagacggactactcaagcttt
ccaatttcacttggaggaccgtcttcgcaagccgcccctgtcccaaaaagctcatcatcc
cgaagctcccgccgtgctccaatgcaaatgtgcttcaacgccggtgacttgggagatgtc
tgctgctgtaacacggattactgtaactcctcacgtctgaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGGACACTCCCAATATGCTACAC 678 621 97 Antisense
ATCACAATCCTATTGCGTCTCGATC 636 27 129 Antisense
GGCCCCGTACAGCGAAGTTGTGACG 671 537 166 Antisense
GTAACTCAATTTCCCAGATCTCACT 552 461 191 Antisense
GACTACTCAAGCTTTCCAATTTCAC 186 373 262 Antisense
TTCACTTGGAGGACCGTCTTCGCAA 324 685 282 Antisense
AAAAAGCTCATCATCCCGAAGCTCC 619 129 321 Antisense
CCGCCGTGCTCCAATGCAAATGTGC 243 263 345 Antisense
TGCAAATGTGCTTCAACGCCGGTGA 341 577 359 Antisense
GATGTCTGCTGCTGTAACACGGATT 268 409 391 Antisense
TACTGTAACTCCTCACGTCTGAAGA 163 647 415 Antisense
Sequence Source Affymetrix Proprietary Database