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[187102_at]

Description T09A5.4 /REP_DB=WormBase Gene ID /WP=CE01085 /TR=SW:P45964 /GB=CAA85332.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 43      4grp_highest_8_8 > 54      4grp_high_8_8 > 09      6grp_total > 20      4grp_total > 22      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 104.5
(1.8)
P 		98.8
(1.2)
P 		54.8
(-3)
P 		117.2
(3)
P 		62
B 134.8
(3)
P 		84
(-2.7)
P 		81.4
(-3)
P 		109.3
(0.1)
P 		53
C 132.3
(3)
P 		49.7
(-3)
P 		65.8
(-1.8)
P 		120.4
(2.1)
P 		83
avr 123.9
(3) 		77.5
(-1.9) 		67.3
(-3) 		115.6
(2.1) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 77.7
(-1.6)
P 		142.4
(3)
P 		137.5
(2.7)
P 		103.1
(0.2)
P 		58
(-3)
A 		95.2
(-0.4)
P 		84
B 82.2
(-3)
P 		170
(3)
P 		131.3
(0.4)
P 		144.7
(1.3)
P 		114.6
(-0.8)
P 		81.6
(-3)
P 		88
C 95.8
(-1.5)
P 		172
(3)
P 		90.8
(-1.8)
P 		160.6
(2.3)
P 		69.7
(-3)
P 		92
(-1.7)
P 		102
avr 85.2
(-2.7) 		161.5
(3) 		119.9
(-0.1) 		136.1
(1.1) 		80.8
(-3) 		89.6
(-2.3) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 38
(3)
P 		21.4
(-1.2)
P 		14.3
(-3)
P 		17.2
(-2.3)
P 		24
B 43
(3)
P 		20.7
(-2.6)
P 		18.9
(-3)
P 		23.3
(-1.9)
P 		24
C 43.8
(3)
P 		14.3
(-3)
P 		22.9
(-1.3)
P 		20.3
(-1.8)
P 		30
avr 41.6
(3) 		18.8
(-3) 		18.7
(-3) 		20.3
(-2.6) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 14.3
(-3)
P 		50.7
(3)
P 		29.9
(-0.4)
P 		26.1
(-1.1)
P 		17.5
(-2.5)
A 		23.2
(-1.5)
P 		36
B 28.6
(-3)
P 		56.6
(3)
P 		31.9
(-2.3)
P 		38.3
(-0.9)
P 		46.6
(0.9)
P 		30.4
(-2.6)
P 		28
C 35.5
(-0.4)
P 		52.5
(3)
P 		23.1
(-2.9)
P 		32.3
(-1)
P 		22.5
(-3)
P 		30.8
(-1.3)
P 		30
avr 26.1
(-3) 		53.3
(3) 		28.3
(-2.5) 		32.2
(-1.7) 		28.9
(-2.4) 		28.1
(-2.6) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187102_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5636
Sequence Type Exemplar sequence
Representative Public ID T09A5.4 NCBI
Target Description T09A5.4 /REP_DB=WormBase Gene ID /WP=CE01085 /TR=SW:P45964 /GB=CAA85332.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063247(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063247 NCBI Caenorhabditis elegans T09A5.4 (T09A5.4) mRNA, complete cds. 11/11 None
SNAP00000029434 ENSEMBL cdna:SNAP chromosome:CEL140:II:7846434:7849683:1 10/11 None
GENEFINDER00000029455 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7846434:7847800:1 11/11 None
T09A5.4 ENSEMBL cdna:known chromosome:CEL140:II:7846410:7847587:1 gene:T09A5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7846406-7847584(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T09A5.4
Entrez Gene 188310 Entrez gene
SwissProt P45964 EMBL-EBI
WormBase CE01085 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA85332 Hypothetical protein T09A5.4 [Caenorhabditis elegans] ref|NP_495648.1| T09A5.4 [Caenorhabditis elegans] sp|P45964|YNZ4_CAEEL Hypothetical protein T09A5.4 in chromosome III 1.0E-161
blast CAA85332 Hypothetical protein T09A5.4 [Caenorhabditis elegans] ref|NP_495648.1| T09A5.4 [Caenorhabditis elegans] sp|P45964|YNZ4_CAEEL Hypothetical protein T09A5.4 in chromosome III 1.0E-153
blast CAA85332 Hypothetical protein T09A5.4 [Caenorhabditis elegans] ref|NP_495648.1| T09A5.4 [Caenorhabditis elegans] sp|P45964|YNZ4_CAEEL Hypothetical protein T09A5.4 in chromosome III 1.0E-133
blast CAE59839 Hypothetical protein CBG03311 [Caenorhabditis briggsae] 1.0E-112
blast CAE59839 Hypothetical protein CBG03311 [Caenorhabditis briggsae] 1.0E-94
blast CAE59839 Hypothetical protein CBG03311 [Caenorhabditis briggsae] 4.0E-77
Sequence
Target Sequence 
>C. ELEGANS:187102_AT
agattccgatctaccgtttgagcaatatataagtggagacattgctcgtttattcaacaa
agcactcgatgtggcaattagacacatggatccaacagttgttcatactattgctcgtga
cggtggagttgctcttatgagcattgataagcctattgaggcacgggatgtcttggttag
aggggaaaaccatcttgtcgcagttccggctgatggtcaactggattttctggagcgtct
cattgtactttattacattatggattcgattttgatagaagagagatggaatgagtatat
ggtttatactgataaagtttggatgatgacaatgaaagaagataagagatgtcctttatt
ggagaatattatcaaggaagtggaacaagtagctgtactattacttgttttccaaagaaa
agttgaatgtagtgaacgtcataaacaactattagcgtcttataggctagatgattggaa
agcaccgatcataaagcataatccacccctttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATTCCGATCTACCGTTTGAGCAA 524 65 297 Antisense
GAGACATTGCTCGTTTATTCAACAA 591 393 332 Antisense
ACAGTTGTTCATACTATTGCTCGTG 20 109 391 Antisense
TGCTCGTGACGGTGGAGTTGCTCTT 450 581 408 Antisense
GAGGCACGGGATGTCTTGGTTAGAG 68 403 454 Antisense
GAGGGGAAAACCATCTTGTCGCAGT 569 399 476 Antisense
AGTTCCGGCTGATGGTCAACTGGAT 473 59 498 Antisense
TCAACTGGATTTTCTGGAGCGTCTC 435 631 513 Antisense
GGAGCGTCTCATTGTACTTTATTAC 670 519 528 Antisense
GTAGCTGTACTATTACTTGTTTTCC 621 457 685 Antisense
CATAAAGCATAATCCACCCCTTTCT 485 213 786 Antisense
Sequence Source Affymetrix Proprietary Database