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[187101_at]

Description Y116F11B.8 /REP_DB=WormBase Gene ID /WP=CE24165 /TR=Q9NEK0 /GB=CAB81977.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 26      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 14.3
(-3)
A 		26.3
(-1.4)
A 		48
(1.5)
A 		59.5
(3)
A 		45
B 22.9
(-2.2)
A 		54.2
(3)
A 		18.1
(-3)
A 		27.6
(-1.4)
A 		36
C 38.1
(-1.4)
A 		58.9
(0.2)
A 		16.8
(-3)
A 		95.8
(3)
A 		79
avr 25.1
(-3) 		46.5
(0.6) 		27.6
(-2.6) 		61
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 44.4
(0.6)
A 		7.9
(-2.7)
A 		5.2
(-2.9)
A 		4.4
(-3)
A 		70.7
(3)
A 		57.3
(1.8)
A 		66
B 37.1
(-0.5)
A 		27.3
(-1.6)
A 		14.4
(-3)
A 		47.9
(0.6)
A 		56.7
(1.6)
A 		69.8
(3)
A 		55
C 5.4
(-2.7)
A 		2.7
(-3)
A 		10
(-2.2)
A 		23.4
(-0.7)
A 		29.4
(-0.1)
A 		57.7
(3)
A 		55
avr 29
(-0.8) 		12.6
(-2.7) 		9.9
(-3) 		25.2
(-1.2) 		52.3
(1.9) 		61.6
(3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 5.2
(-3)
A 		5.7
(-2.6)
A 		12.6
(3)
A 		8.7
(-0.2)
A 		7
B 7.3
(-1)
A 		13.4
(3)
A 		4.2
(-3)
A 		5.9
(-1.9)
A 		9
C 12.6
(0.7)
A 		16.9
(3)
A 		5.8
(-3)
A 		16.2
(2.6)
A 		11
avr 8.4
(-1.8) 		12
(3) 		7.5
(-3) 		10.3
(0.7) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 8.2
(-0.9)
A 		2.8
(-2.5)
A 		1.1
(-3)
A 		1.1
(-3)
A 		21.3
(3)
A 		14
(0.8)
A 		20
B 12.9
(-0.5)
A 		9.1
(-1.5)
A 		3.5
(-3)
A 		12.7
(-0.5)
A 		23
(2.2)
A 		26
(3)
A 		23
C 2
(-2.6)
A 		0.8
(-3)
A 		2.6
(-2.4)
A 		4.7
(-1.7)
A 		9.5
(-0.2)
A 		19.3
(3)
A 		19
avr 7.7
(-1.2) 		4.2
(-2.4) 		2.4
(-3) 		6.2
(-1.7) 		17.9
(2.3) 		19.8
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187101_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14349
Sequence Type Exemplar sequence
Representative Public ID Y116F11B.8 NCBI
Target Description Y116F11B.8 /REP_DB=WormBase Gene ID /WP=CE24165 /TR=Q9NEK0 /GB=CAB81977.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075445(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075445 NCBI Caenorhabditis elegans Y116F11B.8 (Y116F11B.8) mRNA, complete cds. 11/11 None
SNAP00000031764 ENSEMBL cdna:SNAP chromosome:CEL140:V:19856607:19867688:1 11/11 None
GENEFINDER00000031779 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19855651:19859561:1 11/11 None
Y116F11B.8 ENSEMBL cdna:known chromosome:CEL140:V:19855651:19859561:1 gene:Y116F11B.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19855650-19858888(+) 91.12 91.12
Public Domain and Genome References
Gene Title
Ensembl Y116F11B.8
Entrez Gene 191020 Entrez gene
SwissProt Q9NEK0 EMBL-EBI
WormBase CE24165 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB81977 Hypothetical protein Y116F11B.8 [Caenorhabditis elegans] ref|NP_507846.1| Y116F11B.8 [Caenorhabditis elegans] 1.0E-135
blast CAB81977 Hypothetical protein Y116F11B.8 [Caenorhabditis elegans] ref|NP_507846.1| Y116F11B.8 [Caenorhabditis elegans] 1.0E-126
blast CAB81977 Hypothetical protein Y116F11B.8 [Caenorhabditis elegans] ref|NP_507846.1| Y116F11B.8 [Caenorhabditis elegans] 5.0E-83
Sequence
Target Sequence 
>C. ELEGANS:187101_AT
tgtaaagagcggtgcctcgtacagccgacgaggaaaccgtctctgaagacttctgcagca
acctcccgagctacagatgctccagtcactagcctgcctcctccgacggaccccccttca
acactcggacctatggagaccccaccgaactcaccgggaacctccagcgcagccacaaca
tcggctccagtcactagcccggctcccacggagcccgcttcaacgctcggacctgtcgtg
atcccctggaactcaccaggaacctccagcaaagccacaacatcggctacagtcactagc
ctggtcttagggccgactacctttagctcagctccccaagctctggattcaagcttggct
gccgatccttcaacagacccttcaccttcaatcagttccaccgatccaactacatattcc
agtactactgctgaggactacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTAAAGAGCGGTGCCTCGTACAGC 30 557 517 Antisense
CAGCCGACGAGGAAACCGTCTCTGA 476 203 538 Antisense
TCTGAAGACTTCTGCAGCAACCTCC 349 607 558 Antisense
TACAGATGCTCCAGTCACTAGCCTG 240 643 588 Antisense
CCCTTCAACACTCGGACCTATGGAG 472 259 630 Antisense
TCGTGATCCCCTGGAACTCACCAGG 317 605 752 Antisense
AAGCCACAACATCGGCTACAGTCAC 364 149 788 Antisense
GTCACTAGCCTGGTCTTAGGGCCGA 320 457 808 Antisense
TGGATTCAAGCTTGGCTGCCGATCC 132 551 860 Antisense
GATCCAACTACATATTCCAGTACTA 589 415 919 Antisense
TCCAGTACTACTGCTGAGGACTACG 684 587 934 Antisense
Sequence Source Affymetrix Proprietary Database