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[187100_s_at]

Description Y57A10A.13 /REP_DB=WormBase Gene ID /WP=CE25500 /TR=Q9NA69 /GB=CAB55016.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 57      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 83      6grp_total > 57      4grp_total > 0      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 413.1
(2.4)
P 		379.9
(-0.4)
P 		349.6
(-3)
P 		420
(3)
P 		70
B 317.4
(-3)
P 		373.5
(-0.3)
P 		424.6
(2.2)
P 		440.5
(3)
P 		123
C 412.8
(3)
P 		330.2
(-3)
P 		382.6
(0.8)
P 		402.7
(2.3)
P 		83
avr 381.1
(-1) 		361.2
(-3) 		385.6
(-0.6) 		421.1
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 270
1 2 3 4 5 6 range
A 471.6
(-0.2)
P 		373.8
(-3)
P 		420.7
(-1.6)
P 		396.8
(-2.3)
P 		448.6
(-0.8)
P 		581.7
(3)
P 		208
B 514.7
(3)
P 		487.1
(0.8)
P 		496
(1.5)
P 		437.7
(-3)
P 		446.9
(-2.3)
P 		506
(2.3)
P 		77
C 394.2
(-0.5)
P 		456
(1.4)
P 		388.2
(-0.7)
P 		391.8
(-0.6)
P 		311.6
(-3)
P 		510.3
(3)
P 		199
avr 460.2
(-0.3) 		439
(-1.3) 		435
(-1.5) 		408.8
(-2.7) 		402.4
(-3) 		532.7
(3) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 150.4
(3)
P 		82.5
(-1.6)
P 		91.4
(-1)
P 		61.5
(-3)
P 		89
B 101.2
(3)
P 		92.3
(-3)
P 		98.4
(1.1)
P 		93.9
(-1.9)
P 		9
C 136.6
(3)
P 		94.9
(-0.6)
P 		133.4
(2.7)
P 		67.9
(-3)
P 		69
avr 129.4
(3) 		89.9
(-1.3) 		107.7
(0.6) 		74.4
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 86.9
(-3)
P 		133
(2.1)
P 		91.6
(-2.5)
P 		100.6
(-1.5)
P 		135.4
(2.3)
P 		141.6
(3)
P 		55
B 179.1
(2.2)
P 		162.1
(0.8)
P 		120.4
(-2.6)
P 		115.9
(-3)
P 		181.6
(2.4)
P 		188.7
(3)
P 		73
C 146.1
(1.4)
P 		139.1
(0.9)
P 		98.8
(-1.7)
P 		78.8
(-3)
P 		100.8
(-1.6)
P 		170.8
(3)
P 		92
avr 137.4
(0.4) 		144.7
(1) 		103.6
(-2.5) 		98.4
(-3) 		139.3
(0.6) 		167
(3) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187100_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2997
Sequence Type Exemplar sequence
Representative Public ID Y57A10A.13 NCBI
Target Description Y57A10A.13 /REP_DB=WormBase Gene ID /WP=CE25500 /TR=Q9NA69 /GB=CAB55016.2 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064189(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064189 NCBI Caenorhabditis elegans Y57A10A.13 (Y57A10A.13) mRNA, complete cds. 11/11 None
SNAP00000026022 ENSEMBL cdna:SNAP chromosome:CEL140:II:12177023:12199029:-1 11/11 None
Y57A10A.13 ENSEMBL cdna:known chromosome:CEL140:II:12176791:12184775:-1 gene:Y57A10A.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000026051 7/11 Cross Hyb Matching Probes None
GENEFINDER00000026062 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12177019-12184747(-) 99.86 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57A10A.13
Entrez Gene 174858 Entrez gene
SwissProt Q9NA69 EMBL-EBI
WormBase CE25500 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8408 3'-5' exonuclease activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55016 Hypothetical protein Y57A10A.13 [Caenorhabditis elegans] ref|NP_496590.1| Y57A10A.13 [Caenorhabditis elegans] 0.0
blast CAE73465 Hypothetical protein CBG20916 [Caenorhabditis briggsae] 0.0
blast CAB60771 Hypothetical protein Y57A10A.15 [Caenorhabditis elegans] ref|NP_496592.1| Y57A10A.15 [Caenorhabditis elegans] 0.0
blast CAE73467 Hypothetical protein CBG20918 [Caenorhabditis briggsae] 0.0
blast T31635 hypothetical protein Y57A10A.m - Caenorhabditis elegans 0.0
blast XP_415556 PREDICTED: similar to hypothetical protein FLJ20433 [Gallus gallus] 2.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR002562 EMBL-EBI 3-5 exonuclease 9.0E-12
Pfam IPR002562 EMBL-EBI 3-5 exonuclease 9.0E-12
Pfam IPR001098 EMBL-EBI DNA-directed DNA polymerase 4.0E-7
Pfam IPR001098 EMBL-EBI DNA-directed DNA polymerase 2.8E-14
Sequence
Target Sequence 
>C. ELEGANS:187100_S_AT
atcacgtactttcatatcttttcgagacgcctgaaatcgtgaaaatcggcttccaattcg
gcgaggatcttcatcaacttcgtgccgctttccgtaattgtgtggcactttacagaccga
ataatgtagtttgtgtcgggaaattgataatggatttaatggatgaaattggaaaattgg
agaattgtgatgattttcgaaaagaatggcttccacatctcactgataacgagacgtcat
cggctgcgaatagtagtgtagaggaacaggcaaatgagacaattgatacgaatgaatcga
tggatgaaggagatggtggaggatcaggaattgttgtcaaaaaagaggaatctgtgaaac
agcaattcctgaataaaggattatcgttcatttgcgagaaattgcttggaagaccgttgg
ataagacagaacaatgctctgtttgggatagaagacctcttagatgcttgcagttacgct
acgccgcaatggacgcctactgcatgcttttgctctatgagaagtgcgcgacaatcttcg
caa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCACGTACTTTCATATCTTTTCGA 215 29 1517 Antisense
AATCGGCTTCCAATTCGGCGAGGAT 125 169 1560 Antisense
CGAGGATCTTCATCAACTTCGTGCC 344 249 1578 Antisense
GTGCCGCTTTCCGTAATTGTGTGGC 576 475 1598 Antisense
TTGTGTGGCACTTTACAGACCGAAT 490 705 1614 Antisense
GCTTCCACATCTCACTGATAACGAG 19 307 1725 Antisense
GATAACGAGACGTCATCGGCTGCGA 412 421 1741 Antisense
AGAAGACCTCTTAGATGCTTGCAGT 600 73 1966 Antisense
TAGATGCTTGCAGTTACGCTACGCC 531 653 1977 Antisense
CCTACTGCATGCTTTTGCTCTATGA 359 269 2012 Antisense
GAGAAGTGCGCGACAATCTTCGCAA 579 391 2035 Antisense
Sequence Source Affymetrix Proprietary Database