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[187098_at]

Description Y105C5B.24 /REP_DB=WormBase Gene ID /WP=CE24074 /TR=Q9U305 /GB=CAB60323.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 10      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 4.2
(-2.8)
A 		10.8
(0.4)
A 		3.8
(-3)
A 		16
(3)
A 		12
B 7.6
(0.7)
A 		9.9
(2.5)
A 		10.6
(3)
A 		2.9
(-3)
A 		8
C 2.9
(-3)
A 		10.3
(-2.5)
A 		5.5
(-2.8)
A 		84.3
(3)
A 		81
avr 4.9
(-3) 		10.3
(-1.9) 		6.6
(-2.7) 		34.4
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 8.9
(3)
A 		3.8
(-1.3)
A 		6.7
(1.2)
A 		8
(2.3)
A 		2
(-2.8)
A 		1.7
(-3)
A 		7
B 28.1
(3)
A 		4
(-2.5)
A 		3.4
(-2.7)
A 		17.9
(0.7)
A 		1.9
(-3)
A 		2
(-3)
A 		26
C 12.7
(3)
A 		1.6
(-2.8)
A 		7.1
(0.1)
A 		8.8
(0.9)
A 		3.9
(-1.6)
A 		1.3
(-3)
A 		11
avr 16.6
(3) 		3.1
(-2.4) 		5.7
(-1.4) 		11.6
(1) 		2.6
(-2.6) 		1.7
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.5
(-0.7)
A 		2.3
(3)
A 		1
(-3)
A 		2.3
(3)
A 		1
B 2.4
(2.7)
A 		2.4
(2.7)
A 		2.5
(3)
A 		0.6
(-3)
A 		2
C 1
(-3)
A 		3
(-2.1)
A 		1.9
(-2.6)
A 		14.2
(3)
A 		13
avr 1.6
(-3) 		2.6
(-1.5) 		1.8
(-2.7) 		5.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.6
(1.5)
A 		1.3
(0.4)
A 		1.5
(1.1)
A 		2
(3)
A 		0.6
(-2.3)
A 		0.4
(-3)
A 		2
B 9.8
(3)
A 		1.3
(-2.6)
A 		0.8
(-2.9)
A 		4.7
(-0.4)
A 		0.8
(-2.9)
A 		0.7
(-3)
A 		9
C 4.7
(3)
A 		0.5
(-2.9)
A 		1.8
(-1)
A 		1.8
(-1)
A 		1.3
(-1.7)
A 		0.4
(-3)
A 		4
avr 5.4
(3) 		1
(-2.4) 		1.4
(-1.9) 		2.8
(-0.2) 		0.9
(-2.5) 		0.5
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187098_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10300
Sequence Type Exemplar sequence
Representative Public ID Y105C5B.24 NCBI
Target Description Y105C5B.24 /REP_DB=WormBase Gene ID /WP=CE24074 /TR=Q9U305 /GB=CAB60323.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y105C5B.24 ENSEMBL cdna:pseudogene chromosome:CEL140:IV:16063287:16064093:-1 gene:Y105C5B.24 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16063292-16064099(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y105C5B.24
Sequence
Target Sequence 
>C. ELEGANS:187098_AT
gaagtttccatcgacactacaacggaaattctgacactgatccagttgatctatggtatc
ccatctttcattttattgatgttttgcatttttggtattttatttaatccaaaattcgcg
gcactgttgactattcatcgattgacatcgattttgtggccgtatcgatgtgaacgagtg
agtaagattttcacccatctcccgaattgtttttgggacagttttatcgatgaagtttat
attttgaatgggaaactcatatgtattcaatttccaagtacacgtgaccaggcaatcaat
ttagttgccgttttctccgcgattcattttttgtggaactctgtcataggattaagcacg
gcggcgtcagagggacgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGTTTCCATCGACACTACAACGG 360 337 43 Antisense
GGAAATTCTGACACTGATCCAGTTG 346 527 66 Antisense
GGTATCCCATCTTTCATTTTATTGA 323 505 97 Antisense
TTAATCCAAAATTCGCGGCACTGTT 652 681 146 Antisense
GCGGCACTGTTGACTATTCATCGAT 611 293 160 Antisense
GATTTTGTGGCCGTATCGATGTGAA 269 429 192 Antisense
TGAGTAAGATTTTCACCCATCTCCC 433 567 221 Antisense
CACCCATCTCCCGAATTGTTTTTGG 285 201 234 Antisense
ATTTCCAAGTACACGTGACCAGGCA 516 15 312 Antisense
TCAATTTAGTTGCCGTTTTCTCCGC 172 633 338 Antisense
GCACGGCGGCGTCAGAGGGACGAGC 264 315 398 Antisense
Sequence Source Affymetrix Proprietary Database