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[187097_at]

Description Y57A10A.14 /REP_DB=WormBase Gene ID /WP=CE22617 /TR=Q9NA82 /GB=CAB55017.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 92      6grp_total > 77      4grp_total > 09      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1321
1 2 3 4 range
A 220.5
(-3)
P 		316.6
(-2.4)
P 		257.3
(-2.8)
P 		1190
(3)
P 		970
B 184.2
(-3)
P 		297
(-2.3)
P 		292.1
(-2.4)
P 		1207.9
(3)
P 		1024
C 182.9
(-3)
P 		276.7
(-2.6)
P 		302.1
(-2.5)
P 		1504.2
(3)
P 		1321
avr 195.9
(-3) 		296.8
(-2.5) 		283.8
(-2.5) 		1300.7
(3) 		1105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 414
1 2 3 4 5 6 range
A 250
(-1.5)
P 		180.3
(-3)
P 		221.5
(-2.1)
P 		215.9
(-2.2)
P 		240.9
(-1.7)
P 		464.6
(3)
P 		284
B 134
(-3)
P 		212.4
(-1.9)
P 		226.2
(-1.7)
P 		202.7
(-2)
P 		223.6
(-1.7)
P 		547.7
(3)
P 		414
C 167.3
(-2.6)
P 		140.5
(-3)
P 		209
(-1.9)
P 		189.2
(-2.2)
P 		221.3
(-1.7)
P 		505.8
(3)
P 		365
avr 183.8
(-2.9) 		177.7
(-3) 		218.9
(-2.2) 		202.6
(-2.5) 		228.6
(-2.1) 		506
(3) 		328
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 199
1 2 3 4 range
A 80.3
(-2.3)
P 		68.7
(-2.9)
P 		67.3
(-3)
P 		174.2
(3)
P 		107
B 58.7
(-3)
P 		73.3
(-2.6)
P 		67.7
(-2.7)
P 		257.4
(3)
P 		199
C 60.6
(-3)
P 		79.5
(-2.4)
P 		105.3
(-1.6)
P 		253.6
(3)
P 		193
avr 66.5
(-3) 		73.8
(-2.7) 		80.1
(-2.5) 		228.4
(3) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 46.1
(-3)
P 		64.1
(-1.4)
P 		48.2
(-2.8)
P 		54.8
(-2.2)
P 		72.7
(-0.6)
P 		113.1
(3)
P 		67
B 46.6
(-3)
P 		70.7
(-2.1)
P 		54.9
(-2.7)
P 		53.7
(-2.7)
P 		90.8
(-1.3)
P 		204.2
(3)
P 		158
C 62
(-1.9)
P 		42.9
(-2.8)
P 		53.2
(-2.3)
P 		38
(-3)
P 		71.6
(-1.5)
P 		169.3
(3)
P 		131
avr 51.6
(-2.9) 		59.2
(-2.4) 		52.1
(-2.8) 		48.8
(-3) 		78.4
(-1.4) 		162.2
(3) 		113
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187097_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3143
Sequence Type Exemplar sequence
Representative Public ID Y57A10A.14 NCBI
Target Description Y57A10A.14 /REP_DB=WormBase Gene ID /WP=CE22617 /TR=Q9NA82 /GB=CAB55017.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064190(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064190 NCBI Caenorhabditis elegans Y57A10A.14 (Y57A10A.14) mRNA, complete cds. 11/11 None
GENEFINDER00000026056 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12185248:12189020:1 11/11 None
Y57A10A.14 ENSEMBL cdna:known chromosome:CEL140:II:12185248:12189020:1 gene:Y57A10A.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026021 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12185244-12189017(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57A10A.14
Entrez Gene 190337 Entrez gene
SwissProt Q9NA82 EMBL-EBI
WormBase CE22617 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55017 Hypothetical protein Y57A10A.14 [Caenorhabditis elegans] ref|NP_496591.1| Y57A10A.14 [Caenorhabditis elegans] 1.0E-105
blast CAE73464 Hypothetical protein CBG20915 [Caenorhabditis briggsae] 8.0E-62
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496591.1 1 178-200
Y57A10A.14 1 178-200
GENEFINDER00000026056 1 178-200
Sequence
Target Sequence 
>C. ELEGANS:187097_AT
gattccaattccagtcgtattaacatattcgacgtattcgacaattccccaacatcatca
tccctatcagattctgatccaagtttacttattgaagaagaagaaccaccgaatccaaaa
aagcgagcagaattgtatcagtggttgaatacctcgtattatggtagtataatacggaag
gttagtgcacaggtaccctaccagccggactatgtacgaattgaagataactcgacgatt
ccaatttttgataacgaagaagattataacgaaatcgttggcggcgccgaaggaaactcg
ttgctcaatgagcacaaaattcagattgatctacagccgagtagtactggaagcaggagg
agtacggagagttacgagctttgtaaaagttgcacatcccgctacacccgccatcgtact
acctatcacgcccgaataatttggcttattttgactaccgtagccctttcctcatcattt
ttcccatatggtctattttcggttgtacttctcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCCAATTCCAGTCGTATTAACA 290 433 115 Antisense
TCGACGTATTCGACAATTCCCCAAC 497 599 143 Antisense
AACATCATCATCCCTATCAGATTCT 113 139 165 Antisense
AGGTTAGTGCACAGGTACCCTACCA 254 1 293 Antisense
CCTACCAGCCGGACTATGTACGAAT 4 269 311 Antisense
TAACGAAATCGTTGGCGGCGCCGAA 582 627 381 Antisense
GGCGCCGAAGGAAACTCGTTGCTCA 184 543 397 Antisense
CTACCTATCACGCCCGAATAATTTG 428 225 533 Antisense
GCTTATTTTGACTACCGTAGCCCTT 415 303 558 Antisense
TCCTCATCATTTTTCCCATATGGTC 159 593 583 Antisense
GTCTATTTTCGGTTGTACTTCTCCT 482 467 605 Antisense
Sequence Source Affymetrix Proprietary Database