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[187096_at]

Description Y113G7B.14 /REP_DB=WormBase Gene ID /WP=CE23294 /TR=Q9U2X2 /GB=CAB54333.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 171
1 2 3 4 range
A 121.7
(0.1)
P 		67.5
(-2)
A 		42.1
(-3)
A 		194.7
(3)
P 		153
B 98
(-1.3)
P 		63.8
(-3)
A 		84.4
(-2)
A 		182.2
(3)
P 		118
C 142.7
(0.1)
P 		81.3
(-2.4)
A 		65.3
(-3)
A 		213.5
(3)
P 		148
avr 120.8
(-0.4) 		70.9
(-2.7) 		63.9
(-3) 		196.8
(3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 53.4
(-3)
A 		120.7
(0.8)
A 		156.9
(2.9)
P 		159.2
(3)
A 		96.9
(-0.5)
A 		99.8
(-0.4)
P 		106
B 64.1
(-2.2)
A 		78.3
(-1.4)
P 		155
(3)
P 		136.1
(1.9)
A 		50.6
(-3)
A 		55.8
(-2.7)
A 		104
C 74.3
(-0.9)
A 		96.2
(0.1)
M 		127.5
(1.6)
P 		155.4
(3)
P 		31.9
(-3)
A 		87
(-0.3)
A 		124
avr 63.9
(-2.7) 		98.4
(-0.4) 		146.5
(2.8) 		150.2
(3) 		59.8
(-3) 		80.9
(-1.6) 		90
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 44.3
(3)
P 		14.6
(-2.4)
A 		11
(-3)
A 		28.5
(0.2)
P 		33
B 31.3
(1)
P 		15.8
(-3)
A 		19.6
(-2)
A 		38.8
(3)
P 		23
C 47.2
(3)
P 		23.4
(-2.8)
A 		22.7
(-3)
A 		36
(0.3)
P 		25
avr 40.9
(3) 		17.9
(-3) 		17.8
(-3) 		34.4
(1.3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 9.8
(-3)
A 		42.9
(3)
A 		34.2
(1.4)
P 		40.4
(2.5)
A 		29.2
(0.5)
A 		24.3
(-0.4)
P 		33
B 22.3
(-2.4)
A 		26.1
(-1.1)
P 		37.6
(3)
P 		36
(2.4)
A 		20.6
(-3)
A 		20.8
(-2.9)
A 		17
C 27.5
(1.6)
A 		29.4
(2.2)
M 		32.5
(3)
P 		31.3
(2.7)
P 		10.3
(-3)
A 		29.1
(2.1)
A 		22
avr 19.9
(-3) 		32.8
(1.8) 		34.8
(2.6) 		35.9
(3) 		20
(-3) 		24.7
(-1.2) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187096_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13135
Sequence Type Exemplar sequence
Representative Public ID Y113G7B.14 NCBI
Target Description Y113G7B.14 /REP_DB=WormBase Gene ID /WP=CE23294 /TR=Q9U2X2 /GB=CAB54333.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075502(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075502 NCBI Caenorhabditis elegans Y113G7B.14 (Y113G7B.14) mRNA, complete cds. 11/11 None
Y113G7B.14 ENSEMBL cdna:known chromosome:CEL140:V:20224832:20226826:1 gene:Y113G7B.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024714 3/11 Cross Hyb Matching Probes None
GENEFINDER00000024724 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20224831-20226826(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y113G7B.14
Entrez Gene 180323 Entrez gene
SwissProt Q9U2X2 EMBL-EBI
WormBase CE23294 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9307 DNA restriction-modification system inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
8026 ATP-dependent helicase activity inferred from electronic annotation QuickGO AmiGO
15668 type III site-specific deoxyribonuclease activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB54333 Hypothetical protein Y113G7B.14 [Caenorhabditis elegans] ref|NP_507903.1| Y113G7B.14 [Caenorhabditis elegans] 0.0
blast CAE60366 Hypothetical protein CBG03965 [Caenorhabditis briggsae] 1.0E-42
blast CAE67662 Hypothetical protein CBG13225 [Caenorhabditis briggsae] 4.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR000330 EMBL-EBI SNF2 related domain 7.6E-23
Sequence
Target Sequence 
>C. ELEGANS:187096_AT
ttgagactgcttgttccgatgatgaaaaacaagcattcgaaagtgccaagacgactttcg
agactgcaaaggaaaaattcacgaaagcaactgaagaatacacattttccaaggaaacct
tgaaaaatgttgcaaaattggccaaaaatggccaatttcccaaaattggccaatttcctg
aaatattcgatattaaacatccaaatgccagaataacaaagacaattaatattatacagg
aagttttaatgaagaaagagaaagtaacagtcagcgtagttttcttgtcagagagagcag
gggcaatcaatttgcatggtgcgacacatgtcattttgctaggcatgcactggaatctgg
ctcttgaacaagaggcatgtagctgcgtatgtaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAGACTGCTTGTTCCGATGATGA 432 703 1088 Antisense
GTGCCAAGACGACTTTCGAGACTGC 62 463 1130 Antisense
GCAACTGAAGAATACACATTTTCCA 257 319 1174 Antisense
TTCCCAAAATTGGCCAATTTCCTGA 251 695 1244 Antisense
CAGTCAGCGTAGTTTTCTTGTCAGA 470 207 1355 Antisense
GTCAGAGAGAGCAGGGGCAATCAAT 428 465 1374 Antisense
GCAATCAATTTGCATGGTGCGACAC 414 321 1390 Antisense
GCGACACATGTCATTTTGCTAGGCA 255 289 1408 Antisense
GCTAGGCATGCACTGGAATCTGGCT 393 303 1425 Antisense
GCACTGGAATCTGGCTCTTGAACAA 36 317 1434 Antisense
GAGGCATGTAGCTGCGTATGTAACA 71 405 1459 Antisense
Sequence Source Affymetrix Proprietary Database