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[187095_at]

Description Y38E10A.22 /REP_DB=WormBase Gene ID /WP=CE21603 /TR=Q9NAI9 /GB=CAB54414.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 18      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 30.9
(-2.2)
A 		70.5
(2.4)
A 		24
(-3)
A 		75.4
(3)
A 		51
B 26.6
(-3)
A 		51.1
(0.6)
A 		40.9
(-0.9)
A 		67.9
(3)
A 		41
C 35.4
(-2.8)
A 		55.7
(-1.6)
A 		31.9
(-3)
A 		134.1
(3)
A 		102
avr 31
(-3) 		59.1
(-0.3) 		32.3
(-2.9) 		92.5
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 15.6
(-3)
A 		43.4
(-0.9)
A 		15.7
(-3)
A 		47.8
(-0.5)
A 		62
(0.6)
A 		93.2
(3)
P 		78
B 26.9
(-1.6)
A 		11.4
(-3)
A 		22.4
(-2)
A 		41.1
(-0.4)
A 		39.5
(-0.5)
A 		79.3
(3)
P 		68
C 23.5
(-2)
A 		40.4
(-0.6)
A 		30.5
(-1.4)
A 		43.8
(-0.3)
A 		10.8
(-3)
A 		84.2
(3)
P 		73
avr 22
(-3) 		31.7
(-2.1) 		22.9
(-2.9) 		44.2
(-0.9) 		37.4
(-1.5) 		85.6
(3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 11.2
(0.3)
A 		15.3
(3)
A 		6.3
(-3)
A 		11
(0.1)
A 		9
B 8.5
(-3)
A 		12.6
(1.1)
A 		9.5
(-2)
A 		14.5
(3)
A 		6
C 11.7
(-2.7)
A 		16
(-0.4)
A 		11.1
(-3)
A 		22.6
(3)
A 		12
avr 10.5
(-1.7) 		14.6
(1.8) 		9
(-3) 		16
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 2.9
(-3)
A 		15.4
(0.8)
A 		3.4
(-2.8)
A 		12.1
(-0.2)
A 		18.7
(1.8)
A 		22.7
(3)
P 		20
B 9.4
(-1.7)
A 		3.8
(-3)
A 		5.4
(-2.6)
A 		10.9
(-1.3)
A 		16
(-0.2)
A 		29.6
(3)
P 		26
C 8.7
(-1.7)
A 		12.3
(-0.9)
A 		7.8
(-2)
A 		8.8
(-1.7)
A 		3.5
(-3)
A 		28.2
(3)
P 		25
avr 7
(-2.6) 		10.5
(-1.6) 		5.5
(-3) 		10.6
(-1.6) 		12.7
(-1) 		26.8
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187095_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2604
Sequence Type Exemplar sequence
Representative Public ID Y38E10A.22 NCBI
Target Description Y38E10A.22 /REP_DB=WormBase Gene ID /WP=CE21603 /TR=Q9NAI9 /GB=CAB54414.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064304(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064304 NCBI Caenorhabditis elegans Y38E10A.22 (Y38E10A.22) mRNA, complete cds. 11/11 None
SNAP00000017450 ENSEMBL cdna:SNAP chromosome:CEL140:II:12673234:12677695:-1 11/11 None
GENEFINDER00000017457 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12673234:12676087:-1 11/11 None
Y38E10A.22 ENSEMBL cdna:known chromosome:CEL140:II:12673234:12676087:-1 gene:Y38E10A.22 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12673230-12676084(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38E10A.22
Entrez Gene 189667 Entrez gene
SwissProt Q9NAI9 EMBL-EBI
WormBase CE35653 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54414 Hypothetical protein Y38E10A.22 [Caenorhabditis elegans] ref|NP_496705.2| Y38E10A.22 [Caenorhabditis elegans] 1.0E-129
blast CAB54414 Hypothetical protein Y38E10A.22 [Caenorhabditis elegans] ref|NP_496705.2| Y38E10A.22 [Caenorhabditis elegans] 1.0E-126
blast CAB54415 Hypothetical protein Y38E10A.23 [Caenorhabditis elegans] ref|NP_496706.1| Y38E10A.23 [Caenorhabditis elegans] 4.0E-63
blast CAE65392 Hypothetical protein CBG10339 [Caenorhabditis briggsae] 2.0E-19
Sequence
Target Sequence 
>C. ELEGANS:187095_AT
attcttaaaatctatactctcctggatggacgttcaagatttgtggatcgggccgatgat
agtgaagaaacgaaggagttctatgaggaaactatgaaaatgatcaaattcgaaatcatg
caaatgcacccggacattattacaccacaaacgagaaaactgctcgaggagcacttcaaa
gaatccaatcttcgagcaggcctgatgccaattggtggatggccggttattccaaaaaac
gagtggccacagccaccacagccaccctgtcataaagccaataagaatgcggagccaaaa
aaggagccggagccagcgaagaaggttgctccaaagcaggagacaaaagtagatcaagaa
gcggcagaattggcgcgaaaaattcaaatcgaggaggataaaactcgaaaacgccacgag
atcgtcgccagattctccattttggacatttacacgaaggaagagctcgccgagaagctc
aagttggacgccgagatgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCTTAAAATCTATACTCTCCTGG 456 11 421 Antisense
TACTCTCCTGGATGGACGTTCAAGA 45 621 435 Antisense
CAAGATTTGTGGATCGGGCCGATGA 103 185 455 Antisense
TGCACCCGGACATTATTACACCACA 675 577 545 Antisense
AAGAATCCAATCTTCGAGCAGGCCT 441 151 599 Antisense
GAGCAGGCCTGATGCCAATTGGTGG 599 389 614 Antisense
CCAATTGGTGGATGGCCGGTTATTC 615 269 628 Antisense
AAAACGAGTGGCCACAGCCACCACA 600 131 656 Antisense
AGCCACCCTGTCATAAAGCCAATAA 113 85 680 Antisense
CGTCGCCAGATTCTCCATTTTGGAC 563 245 843 Antisense
AGCTCAAGTTGGACGCCGAGATGGA 300 77 896 Antisense
Sequence Source Affymetrix Proprietary Database