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[187094_s_at]

Description Y65B4BR.5 /REP_DB=WormBase Gene ID /WP=CE22740 /TR=Q9N2Z8 /GB=AAF60854.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 40      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 18      6grp_total > 40      4grp_total > 09      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33003
1 2 3 4 range
A 19155.7
(-3)
P
24766.6
(-1.9)
P
25994.5
(-1.7)
P
50369.1
(3)
P
31213
B 20022.9
(-3)
P
22025.8
(-2.4)
P
25600.6
(-1.4)
P
41482.8
(3)
P
21460
C 17365.7
(-3)
P
21648
(-2.2)
P
20666.7
(-2.4)
P
48267.9
(3)
P
30902
avr 18848.1
(-3)
22813.5
(-2.1)
24087.3
(-1.9)
46706.6
(3)
27859

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6920
1 2 3 4 5 6 range
A 17146.8
(1.4)
P
17856.9
(2.1)
P
16727.1
(1)
P
18813.9
(3)
P
12600.9
(-3)
P
18069.2
(2.3)
P
6213
B 16311.2
(-0.2)
P
15914.8
(-0.6)
P
19521.3
(3)
P
14820.8
(-1.6)
P
13437.2
(-3)
P
14424.9
(-2)
P
6084
C 15462.9
(-3)
P
16136
(-1.8)
P
18802.4
(3)
P
18723.5
(2.9)
P
16836.6
(-0.5)
P
16041.7
(-2)
P
3340
avr 16307
(-0)
16635.9
(0.5)
18350.3
(3)
17452.7
(1.7)
14291.6
(-3)
16178.6
(-0.2)
4059
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3464
1 2 3 4 range
A 6974.6
(1.8)
P
5376.2
(-3)
P
6795.5
(1.3)
P
7373
(3)
P
1997
B 6385.2
(-1.3)
P
5439.9
(-3)
P
5932.3
(-2.1)
P
8840
(3)
P
3400
C 5748.5
(-3)
P
6223.9
(-1.8)
P
7203
(0.7)
P
8138.7
(3)
P
2390
avr 6369.4
(-1.3)
5680
(-3)
6643.6
(-0.6)
8117.2
(3)
2437

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3190
1 2 3 4 5 6 range
A 3160.9
(-3)
P
6350.8
(3)
P
3642.8
(-2.1)
P
4771.6
(0)
P
3802.4
(-1.8)
P
4399.3
(-0.7)
P
3190
B 5675.5
(3)
P
5297.4
(1.7)
P
4740.4
(-0.2)
P
3925.5
(-3)
P
5459.4
(2.3)
P
5379
(2)
P
1750
C 5731.4
(3)
P
4923.6
(0.5)
P
4785.5
(0.1)
P
3765.3
(-3)
P
5448.1
(2.1)
P
5370.1
(1.9)
P
1966
avr 4855.9
(0.1)
5523.9
(3)
4389.6
(-2)
4154.1
(-3)
4903.3
(0.3)
5049.5
(0.9)
1370
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187094_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2550
Sequence Type Exemplar sequence
Representative Public ID Y65B4BR.5 NCBI
Target Description Y65B4BR.5 /REP_DB=WormBase Gene ID /WP=CE22740 /TR=Q9N2Z8 /GB=AAF60854.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058348(11), NM_182046(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_058348 NCBI Caenorhabditis elegans Y65B4BR.5a (Y65B4BR.5) mRNA, complete cds. 11/11 A 
NM_182046 NCBI Caenorhabditis elegans Y65B4BR.5b (Y65B4BR.5) mRNA, complete cds. 11/11 A 
SNAP00000036979 ENSEMBL cdna:SNAP chromosome:CEL140:I:535811:536496:1 11/11 None
GENEFINDER00000036995 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:535811:541634:1 11/11 None
Y65B4BR.5a.3 ENSEMBL cdna:known chromosome:CEL140:I:535788:536588:1 gene:Y65B4BR.5 11/11 None
Y65B4BR.5a.2 ENSEMBL cdna:known chromosome:CEL140:I:535788:536881:1 gene:Y65B4BR.5 11/11 A 
Y65B4BR.5b ENSEMBL cdna:known chromosome:CEL140:I:535792:536619:1 gene:Y65B4BR.5 11/11 A 
Y65B4BR.5a.1 ENSEMBL cdna:known chromosome:CEL140:I:535794:536588:1 gene:Y65B4BR.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:535810-536496(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y65B4BR.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN73850 Ww domain protein (e3 ubiquitin ligase) protein 1, isoform b [Caenorhabditis elegans] ref|NP_740776.1| WW domain Protein (E3 ubiquitin ligase) family member (wwp-1) [Caenorhabditis elegans] 0.0
blast AAN73849 Ww domain protein (e3 ubiquitin ligase) protein 1, isoform a [Caenorhabditis elegans] ref|NP_740775.1| WW domain Protein (E3 ubiquitin ligase) family member (wwp-1) [Caenorhabditis elegans] 0.0
blast CAE61291 Hypothetical protein CBG05115 [Caenorhabditis briggsae] 0.0
blast AAO21415 Hypothetical protein Y65B4BR.5b [Caenorhabditis elegans] ref|NP_871846.1| Y65B4BR.5b [Caenorhabditis elegans] sp|Q86S66|NACA_CAEEL Nascent polypeptide-associated complex alpha subunit (NAC-alpha) (Alpha-NAC) 6.0E-95
blast AAF60854 Hypothetical protein Y65B4BR.5a [Caenorhabditis elegans] ref|NP_490749.1| Y65B4BR.5a [Caenorhabditis elegans] 1.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR002715 EMBL-EBI Nascent polypeptide-associated complex NAC 2.4E-24
Pfam IPR000449 EMBL-EBI Ubiquitin-associated domain 2.2E-5
Pfam IPR000449 EMBL-EBI Ubiquitin-associated domain 2.2E-5
Pfam IPR000449 EMBL-EBI Ubiquitin-associated domain 1.6E-6
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 3.5E-15
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 6.0E-16
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 8.9E-13
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 2.5E-12
Pfam IPR000569 EMBL-EBI HECT domain (Ubiquitin-protein ligase) 2.8E-16
Pfam IPR000569 EMBL-EBI HECT domain (Ubiquitin-protein ligase) 1.1E-102
Pfam IPR000008 EMBL-EBI C2 domain 3.1E-7
Sequence
Target Sequence
>C. ELEGANS:187094_S_AT
gaagccaagatcgaggatctcacccaacacgcccagatgtctgctattgagaacttgaag
ccaactcgtgaggccccacaactcaagactgtcgaagaggacgagaatgaggatgttgag
gaggattccaccggcattgaggagaaggacatcgagcttgtcatttccc


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
GAAGCCAAGATCGAGGATCTCACCC 316 345 343 Antisense
CAAGATCGAGGATCTCACCCAACAC 1 185 348 Antisense
CCAACACGCCCAGATGTCTGCTATT 86 277 366 Antisense
CACGCCCAGATGTCTGCTATTGAGA 66 201 370 Antisense
GTCTGCTATTGAGAACTTGAAGCCA 330 471 381 Antisense
ACTTGAAGCCAACTCGTGAGGCCCC 386 101 395 Antisense
CCCCACAACTCAAGACTGTCGAAGA 132 263 416 Antisense
AACTCAAGACTGTCGAAGAGGACGA 181 139 422 Antisense
ATGTTGAGGAGGATTCCACCGGCAT 118 45 455 Antisense
GAGGATTCCACCGGCATTGAGGAGA 514 403 463 Antisense
AAGGACATCGAGCTTGTCATTTCCC 385 161 487 Antisense
Sequence Source Affymetrix Proprietary Database