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[187092_s_at]

Description F33D11.9B /REP_DB=WormBase Gene ID /WP=CE28390 /TR=O44780 /GB=AAB96703.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 98      4grp_highest_8_8 > 57      4grp_high_8_8 > 34      6grp_highest_nonorm > 94      6grp_total > 98      4grp_total > 45      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 201
1 2 3 4 range
A 503.1
(3)
P 		395.7
(-1.5)
P 		358.6
(-3)
P 		372.6
(-2.4)
P 		145
B 460.8
(3)
P 		410.7
(1)
P 		313.4
(-3)
P 		352.5
(-1.4)
P 		147
C 514.5
(3)
P 		423.6
(0.2)
P 		391.3
(-0.8)
P 		318.5
(-3)
P 		196
avr 492.8
(3) 		410
(-0.4) 		354.4
(-2.7) 		347.9
(-3) 		145

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 491
1 2 3 4 5 6 range
A 334.7
(-3)
P 		439.9
(-1.7)
P 		399.6
(-2.2)
P 		431.9
(-1.8)
P 		698.1
(1.4)
P 		826.1
(3)
P 		491
B 418.8
(-2)
P 		391.9
(-2.4)
P 		354.4
(-3)
P 		442.8
(-1.7)
P 		699.1
(2.1)
P 		756.4
(3)
P 		402
C 421.8
(-2.7)
P 		401.1
(-3)
P 		545.4
(-0.7)
P 		510.5
(-1.3)
P 		714.2
(1.9)
P 		784.8
(3)
P 		384
avr 391.8
(-3) 		411
(-2.7) 		433.1
(-2.4) 		461.7
(-1.9) 		703.8
(1.7) 		789.1
(3) 		397
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 183.2
(3)
P 		85.9
(-1.5)
P 		93.7
(-1.2)
P 		54.5
(-3)
P 		129
B 147
(3)
P 		101.4
(-0.7)
P 		72.6
(-3)
P 		75.1
(-2.8)
P 		74
C 170.3
(3)
P 		121.8
(0.5)
P 		136.4
(1.3)
P 		53.7
(-3)
P 		117
avr 166.8
(3) 		103
(-0.6) 		100.9
(-0.7) 		61.1
(-3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 61.7
(-3)
P 		156.4
(0.8)
P 		87
(-2)
P 		109.5
(-1.1)
P 		210.7
(3)
P 		201.1
(2.6)
P 		149
B 145.7
(-1.2)
P 		130.4
(-1.7)
P 		86.1
(-3)
P 		117.3
(-2.1)
P 		284
(3)
P 		282.1
(2.9)
P 		198
C 156.4
(-1)
P 		122.4
(-2.3)
P 		138.8
(-1.6)
P 		102.7
(-3)
P 		231.1
(1.8)
P 		262.7
(3)
P 		160
avr 121.3
(-2.3) 		136.4
(-1.7) 		104
(-3) 		109.8
(-2.8) 		241.9
(2.7) 		248.6
(3) 		145
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187092_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1492
Sequence Type Exemplar sequence
Representative Public ID F33D11.9B NCBI
Target Description F33D11.9B /REP_DB=WormBase Gene ID /WP=CE28390 /TR=O44780 /GB=AAB96703.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059300(11), NM_059299(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059300 NCBI Caenorhabditis elegans F33D11.9a (F33D11.9) mRNA, complete cds. 11/11 None
NM_059299 NCBI Caenorhabditis elegans F33D11.9b (F33D11.9) mRNA, complete cds. 11/11 None
SNAP00000028958 ENSEMBL cdna:SNAP chromosome:CEL140:I:5865876:5870645:-1 11/11 None
GENEFINDER00000028967 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5865876:5872875:-1 11/11 None
F33D11.9a.1 ENSEMBL cdna:known chromosome:CEL140:I:5865699:5867756:-1 gene:F33D11.9 11/11 None
F33D11.9a.3 ENSEMBL cdna:known chromosome:CEL140:I:5865699:5868802:-1 gene:F33D11.9 11/11 None
F33D11.9a.2 ENSEMBL cdna:known chromosome:CEL140:I:5865699:5867758:-1 gene:F33D11.9 11/11 None
F33D11.9b ENSEMBL cdna:known chromosome:CEL140:I:5865876:5870693:-1 gene:F33D11.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5865875-5872803(-) 98.95 100.0
Public Domain and Genome References
Ensembl F33D11.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68360 Hypothetical protein F33D11.9b [Caenorhabditis elegans] ref|NP_491700.2| F33D11.9b [Caenorhabditis elegans] 0.0
blast T32771 hypothetical protein F33D11.9b - Caenorhabditis elegans 0.0
blast AAK68360 Hypothetical protein F33D11.9b [Caenorhabditis elegans] ref|NP_491700.2| F33D11.9b [Caenorhabditis elegans] 1.0E-157
blast AAB96702 Hypothetical protein F33D11.9a [Caenorhabditis elegans] ref|NP_491701.2| F33D11.9a [Caenorhabditis elegans] 1.0E-157
Protein Domains
Database ID Description E-Value
Pfam IPR007246 EMBL-EBI Gaa1-like, GPI transamidase component 3.2E-6
Pfam IPR007246 EMBL-EBI Gaa1-like, GPI transamidase component 4.6E-13
Pfam IPR007246 EMBL-EBI Gaa1-like, GPI transamidase component 3.2E-6
Pfam IPR007246 EMBL-EBI Gaa1-like, GPI transamidase component 4.6E-13
Pfam IPR007246 EMBL-EBI Gaa1-like, GPI transamidase component 3.2E-6
Pfam IPR007246 EMBL-EBI Gaa1-like, GPI transamidase component 4.6E-13
Pfam IPR001594 EMBL-EBI Zn-finger, DHHC type 7.1E-32
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491701.2 6 4-21,34-56,79-101,122-144,159-181,220-242
NP_491700.2 7 42-59,393-415,428-450,473-495,516-538,553-575,614-636
F33D11.9a.1 6 4-21,34-56,79-101,122-144,159-181,220-242
F33D11.9a.3 6 4-21,34-56,79-101,122-144,159-181,220-242
F33D11.9a.2 6 4-21,34-56,79-101,122-144,159-181,220-242
F33D11.9b 7 42-59,393-415,428-450,473-495,516-538,553-575,614-636
SNAP00000028958 7 21-43,377-399,412-434,457-479,500-522,537-559,598-620
GENEFINDER00000028967 11 24-46,56-75,152-174,189-211,328-345,679-701,714-736,759-781,802-824,839-861,900-922
Sequence
Target Sequence 
>C. ELEGANS:187092_S_AT
gaattccaatttccagtggtccatttggcattccacgtgctcggattcttctactacatt
gcaactacatatgtatttcaaacaattggaacaacatttgttcttcaatggatgcaatgg
ccatttgttggtattgatggatgtgatggacagtttacaccatcatggtctctaatcaac
agttttctcatattcttcatgattccattaggaccatatgttttcttgaaaactcgcagt
atcttccgatcttcagtccttgccatcctcaatccaatctccgtgcttgcatttgtggcg
attaacattccgggaatgttcggacaactattcccaactatttctcaagattcatggctc
gccgctgctcaaagcattgcactcacagctatcagagaagacgtggaatttaaagtgaat
catttcttccttttgtgctgctttggttatcctatctggaatatgctttttgcctgttcg
atgcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCCAATTTCCAGTGGTCCATT 371 323 2056 Antisense
GTGGTCCATTTGGCATTCCACGTGC 623 483 2071 Antisense
ATTCTTCTACTACATTGCAACTACA 567 11 2100 Antisense
CACCATCATGGTCTCTAATCAACAG 499 201 2213 Antisense
TCGCAGTATCTTCCGATCTTCAGTC 118 601 2289 Antisense
ATCTCCGTGCTTGCATTTGTGGCGA 401 31 2332 Antisense
GACAACTATTCCCAACTATTTCTCA 295 365 2378 Antisense
ATTTCTCAAGATTCATGGCTCGCCG 302 17 2395 Antisense
AAAGCATTGCACTCACAGCTATCAG 612 123 2426 Antisense
TTTTGTGCTGCTTTGGTTATCCTAT 52 677 2486 Antisense
ATGCTTTTTGCCTGTTCGATGCGAT 574 41 2518 Antisense
Sequence Source Affymetrix Proprietary Database