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[187091_at]

Description Y105C5B.18 /REP_DB=WormBase Gene ID /WP=CE24067 /TR=Q9NAM3 /GB=CAB54363.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 16      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 18.8
(-3)
A 		31.7
(-2)
A 		22.9
(-2.7)
A 		98.2
(3)
A 		79
B 23.7
(0.8)
A 		6.1
(-3)
A 		30.9
(2.3)
A 		34.2
(3)
A 		28
C 5.1
(-3)
A 		36.9
(3)
A 		35.1
(2.7)
A 		28.3
(1.4)
A 		32
avr 15.9
(-3) 		24.9
(-1.6) 		29.6
(-0.8) 		53.6
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 10.9
(-2.3)
A 		28.6
(-0.4)
A 		4.3
(-3)
A 		21.8
(-1.2)
A 		60.5
(2.9)
A 		61.4
(3)
M 		57
B 22.2
(-2.4)
A 		22.3
(-2.4)
A 		18.9
(-2.5)
A 		7.2
(-3)
A 		94.9
(0.7)
P 		147.7
(3)
P 		141
C 2.9
(-3)
A 		4.8
(-2.9)
A 		4.5
(-2.9)
A 		8.9
(-2.7)
A 		62.5
(0)
P 		122.1
(3)
P 		119
avr 12
(-2.8) 		18.6
(-2.4) 		9.2
(-3) 		12.6
(-2.8) 		72.6
(0.8) 		110.4
(3) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 6.8
(-2.4)
A 		6.9
(-2.4)
A 		6
(-3)
A 		14.4
(3)
A 		8
B 7.6
(3)
A 		1.5
(-3)
A 		7.2
(2.6)
A 		7.3
(2.7)
A 		6
C 1.7
(-3)
A 		10.6
(2.1)
A 		12.2
(3)
A 		4.8
(-1.2)
A 		11
avr 5.4
(-3) 		6.3
(-1.4) 		8.5
(2.5) 		8.8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 2
(-2.6)
A 		10.2
(0.2)
A 		0.9
(-3)
A 		5.5
(-1.4)
A 		18.3
(3)
A 		14.9
(1.8)
M 		17
B 7.7
(-2.3)
A 		7.4
(-2.4)
A 		4.6
(-2.7)
A 		1.9
(-3)
A 		38.6
(1.1)
P 		55.1
(3)
P 		53
C 1.1
(-3)
A 		1.5
(-2.9)
A 		1.1
(-3)
A 		1.8
(-2.9)
A 		20.2
(-0.1)
P 		40.9
(3)
P 		40
avr 3.6
(-2.8) 		6.4
(-2.3) 		2.2
(-3) 		3.1
(-2.8) 		25.7
(1.1) 		37
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187091_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9145
Sequence Type Exemplar sequence
Representative Public ID Y105C5B.18 NCBI
Target Description Y105C5B.18 /REP_DB=WormBase Gene ID /WP=CE24067 /TR=Q9NAM3 /GB=CAB54363.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070506
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000018429 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15964638:15965572:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070506 8/11 Cross Hyb Matching Probes None
SNAP00000018402 8/11 Cross Hyb Matching Probes None
Y105C5B.18 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15964643-15965578(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54363 Hypothetical protein Y105C5B.18 [Caenorhabditis elegans] ref|NP_502907.3| Y105C5B.18 [Caenorhabditis elegans] 4.0E-72
Sequence
Target Sequence 
>C. ELEGANS:187091_AT
tcttctaattttcatcagcgcaccatgggtgttgtccgttactgttaagcggaatatgac
cgagtatgagcagaaaattcatatcaacctactcaatgggatccgtcagaagaatgcgat
tgatgagcaagtggctaatatgcatgagctggtctacgatcccgctctggaatccttatc
atatccagaatgcgaaatctccaacgatgatattaccgtaaggaacaatgatggcgtatc
cacatattataatgcattcccaccaacggacagatattgggtaacacccggaaaacgtcg
gctgcttgatactttcaaatggtttaggtgtactatgcgcaacacattgatcccctgcaa
acgtctgccgcatgccatcatctcacctgcaaatccggcagttccaataataacagtgtc
agcggatgtatttttggacctgtgtagtcgtaaattcagcagctcggaagtggtgaaagg
agagcctggttcaaagtgcccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCTAATTTTCATCAGCGCACCA 495 617 30 Antisense
CACCATGGGTGTTGTCCGTTACTGT 232 201 50 Antisense
TCAACCTACTCAATGGGATCCGTCA 237 587 113 Antisense
TCCCGCTCTGGAATCCTTATCATAT 92 597 189 Antisense
TATTATAATGCATTCCCACCAACGG 213 663 274 Antisense
AAAACGTCGGCTGCTTGATACTTTC 477 131 321 Antisense
TACTATGCGCAACACATTGATCCCC 9 647 360 Antisense
CTCACCTGCAAATCCGGCAGTTCCA 631 227 411 Antisense
GCGGATGTATTTTTGGACCTGTGTA 210 285 451 Antisense
GTAGTCGTAAATTCAGCAGCTCGGA 46 457 473 Antisense
GGAGAGCCTGGTTCAAAGTGCCCAA 700 23 508 Antisense
Sequence Source Affymetrix Proprietary Database