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[187089_s_at]

Description F59B2.6 /REP_DB=WormBase Gene ID /WP=CE00233 /TR=SW:P34482 /GB=CAA77583.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 31      6grp_total > 96      4grp_total > 24      6grp_cgc > 78      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 59.9
(-2.3)
P 		43.6
(-3)
A 		133.6
(0.7)
P 		188.1
(3)
M 		145
B 67.3
(-3)
A 		72.4
(-2.4)
P 		116.1
(3)
P 		103.1
(1.4)
P 		49
C 56.3
(-3)
P 		111.9
(0.6)
P 		109.5
(0.4)
P 		149.7
(3)
P 		93
avr 61.2
(-3) 		76
(-2) 		119.7
(1.1) 		147
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 789
1 2 3 4 5 6 range
A 86.7
(-2.8)
A 		62.1
(-3)
P 		145.6
(-2.2)
P 		329
(-0.5)
P 		660.7
(2.6)
P 		703.4
(3)
P 		641
B 77.3
(-3)
A 		110.5
(-2.7)
P 		89.3
(-2.9)
A 		427.1
(-0.1)
P 		624.7
(1.6)
P 		789.7
(3)
P 		712
C 69.5
(-3)
M 		101.4
(-2.8)
P 		111.3
(-2.7)
P 		430.8
(-0.2)
P 		526.7
(0.5)
P 		850.7
(3)
P 		781
avr 77.8
(-3) 		91.3
(-2.9) 		115.4
(-2.7) 		395.6
(-0.3) 		604
(1.5) 		781.3
(3) 		704
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 21.8
(-0.1)
P 		9.5
(-3)
A 		34.9
(3)
P 		27.5
(1.3)
M 		25
B 21.4
(-0.7)
A 		17.9
(-3)
P 		26.9
(3)
P 		22
(-0.3)
P 		9
C 18.6
(-3)
P 		32.2
(1.2)
P 		38.2
(3)
P 		25.2
(-1)
P 		20
avr 20.6
(-2.7) 		19.9
(-3) 		33.3
(3) 		24.9
(-0.8) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 279
1 2 3 4 5 6 range
A 16
(-3)
A 		22.1
(-2.8)
P 		31.7
(-2.5)
P 		83.4
(-0.8)
P 		199.4
(3)
P 		171.3
(2.1)
P 		183
B 26.9
(-2.9)
A 		36.8
(-2.7)
P 		21.7
(-3)
A 		113.1
(-1)
P 		253.8
(2.1)
P 		294.5
(3)
P 		273
C 25.8
(-3)
M 		30.9
(-2.9)
P 		28.3
(-2.9)
P 		86.6
(-1.6)
P 		170.4
(0.3)
P 		284.8
(3)
P 		259
avr 22.9
(-3) 		29.9
(-2.8) 		27.2
(-2.9) 		94.4
(-1.1) 		207.9
(1.9) 		250.2
(3) 		227
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187089_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6237
Sequence Type Exemplar sequence
Representative Public ID F59B2.6 NCBI
Target Description F59B2.6 /REP_DB=WormBase Gene ID /WP=CE00233 /TR=SW:P34482 /GB=CAA77583.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066591(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066591 NCBI Caenorhabditis elegans ZInc Finger-interacting protein family member (zif-1) (zif-1) mRNA, complete cds. 9/11 None
SNAP00000012575 ENSEMBL cdna:SNAP chromosome:CEL140:III:9002695:9004441:1 9/11 None
GENEFINDER00000012587 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9002695:9004441:1 9/11 None
F59B2.6 ENSEMBL cdna:known chromosome:CEL140:III:9002695:9004745:1 gene:F59B2.6 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9002690-9004437(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol zif-1
Ensembl F59B2.6
Entrez Gene 176274 Entrez gene
SwissProt P34482 EMBL-EBI
WormBase CE34193 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA77583 Hypothetical protein F59B2.6 [Caenorhabditis elegans] ref|NP_498992.2| ZInc Finger-interacting protein family member (zif-1) [Caenorhabditis elegans] gb|AAS49906.1| SOCS-box protein ZIF-1 [Caenorhabditis elegans] sp|P34482|ZIF1_CAEEL Zinc finger interacting factor 1 (Zif-1 protein) 0.0
blast CAE62704 Hypothetical protein CBG06853 [Caenorhabditis briggsae] 1.0E-166
Sequence
Target Sequence 
>C. ELEGANS:187089_S_AT
aacgatggtcacactttactgttgatatggggctcagcaagaaaatgagaacccgtgttg
ccgatttggacgcccgtgattactgttgcagccataagccacgtaattcgtcattctgct
gtattgacttggacagcgagcgaatcaaggctgtggatgctctcattcttgggtacaaat
taatctatttttttcctaagtatttttttttcagaactgacgtggttcttccccatccta
gtggctctgtattcctatttcgatacaaggaaaattatgggatgagttattgcgagcttc
cattcttccagccactttcattgaagctaaaatgtattcaagttctcaaggaatctgtcg
aaatcgacccaagttactata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGATGGTCACACTTTACTGTTGA 302 143 1061 Antisense
TTTGGACGCCCGTGATTACTGTTGC 368 659 1125 Antisense
TTACTGTTGCAGCCATAAGCCACGT 615 677 1140 Antisense
CCACGTAATTCGTCATTCTGCTGTA 142 271 1159 Antisense
GAATCAAGGCTGTGGATGCTCTCAT 597 327 1202 Antisense
GATGCTCTCATTCTTGGGTACAAAT 488 413 1216 Antisense
TCAGAACTGACGTGGTTCTTCCCCA 297 601 1271 Antisense
TAGTGGCTCTGTATTCCTATTTCGA 428 653 1299 Antisense
GAGTTATTGCGAGCTTCCATTCTTC 296 397 1344 Antisense
ATTCTTCCAGCCACTTTCATTGAAG 309 11 1362 Antisense
GTCGAAATCGACCCAAGTTACTATA 443 471 1417 Antisense
Sequence Source Affymetrix Proprietary Database