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[187088_at]

Description Y55B1AR.3 /REP_DB=WormBase Gene ID /WP=CE25475 /TR=Q9N383 /GB=AAF60787.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 76
(0.9)
A 		77.5
(1.6)
A 		80.2
(3)
A 		68.3
(-3)
A 		12
B 43
(-1.4)
A 		143.6
(3)
M 		5.8
(-3)
A 		66.1
(-0.4)
A 		138
C 62.9
(0.2)
A 		58
(-0.3)
P 		27.5
(-3)
P 		94.5
(3)
A 		67
avr 60.6
(-0.5) 		93
(3) 		37.8
(-3) 		76.3
(1.2) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 43.6
(-2.5)
A 		60.1
(-0.4)
A 		72
(1.1)
M 		64.6
(0.1)
A 		87.5
(3)
A 		39.7
(-3)
A 		48
B 22.9
(-2)
A 		68.5
(2.9)
A 		24.9
(-1.8)
A 		69.2
(3)
A 		29
(-1.3)
A 		13.5
(-3)
A 		56
C 63.6
(0.8)
A 		51.3
(-0.3)
A 		86.7
(3)
A 		41.6
(-1.2)
A 		53.8
(-0.1)
A 		22.4
(-3)
A 		64
avr 43.4
(0) 		60
(2.8) 		61.2
(3) 		58.5
(2.6) 		56.8
(2.3) 		25.2
(-3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 27.7
(3)
A 		16.8
(-0.7)
A 		21
(0.7)
A 		10
(-3)
A 		18
B 13.7
(-0.8)
A 		35.5
(3)
M 		1.3
(-3)
A 		14.1
(-0.8)
A 		34
C 20.8
(3)
A 		16.7
(0.8)
P 		9.6
(-3)
P 		15.9
(0.4)
A 		11
avr 20.7
(1.9) 		23
(3) 		10.6
(-3) 		13.3
(-1.7) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 8
(-3)
A 		21.4
(1.4)
A 		15.7
(-0.5)
M 		16.4
(-0.3)
A 		26.4
(3)
A 		9.7
(-2.4)
A 		18
B 8
(-2)
A 		22.8
(3)
A 		6
(-2.7)
A 		18.3
(1.5)
A 		11.8
(-0.7)
A 		5
(-3)
A 		18
C 23.6
(3)
A 		15.7
(0.1)
A 		22.1
(2.4)
A 		8.4
(-2.7)
A 		17.4
(0.7)
A 		7.5
(-3)
A 		16
avr 13.2
(-0.2) 		20
(3) 		14.6
(0.4) 		14.4
(0.3) 		18.5
(2.3) 		7.4
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187088_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8355
Sequence Type Exemplar sequence
Representative Public ID Y55B1AR.3 NCBI
Target Description Y55B1AR.3 /REP_DB=WormBase Gene ID /WP=CE25475 /TR=Q9N383 /GB=AAF60787.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064815(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064815 NCBI Caenorhabditis elegans Y55B1AR.3 (Y55B1AR.3) mRNA, complete cds. 11/11 None
SNAP00000028885 ENSEMBL cdna:SNAP chromosome:CEL140:III:602705:603819:-1 11/11 None
GENEFINDER00000028890 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:602705:603819:-1 11/11 None
Y55B1AR.3 ENSEMBL cdna:known chromosome:CEL140:III:602705:603819:-1 gene:Y55B1AR.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:602704-603819(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y55B1AR.3
Entrez Gene 190299 Entrez gene
SwissProt Q9N383 EMBL-EBI
WormBase CE25475 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60787 Hypothetical protein Y55B1AR.3 [Caenorhabditis elegans] ref|NP_497216.1| Y55B1AR.3 [Caenorhabditis elegans] 1.0E-157
blast AAF60787 Hypothetical protein Y55B1AR.3 [Caenorhabditis elegans] ref|NP_497216.1| Y55B1AR.3 [Caenorhabditis elegans] 1.0E-141
blast AAF60784 Hypothetical protein Y55B1AR.4 [Caenorhabditis elegans] ref|NP_497217.1| Y55B1AR.4 [Caenorhabditis elegans] 1.0E-56
blast AAF60784 Hypothetical protein Y55B1AR.4 [Caenorhabditis elegans] ref|NP_497217.1| Y55B1AR.4 [Caenorhabditis elegans] 2.0E-54
Sequence
Target Sequence 
>C. ELEGANS:187088_AT
gactcatgtagcactaagttctcgaaattcgatcaggaactaggcaaggattcggaaagt
ggagaagcaaccacaccaccagggtgcaatttgaatgccactcttgctaacgtggcagtt
ttgctgaaaaccccgaagcttgaactcgatctgctcagaattgatcttccagagttgatt
caggatgagcaaaaggaattgttctttgatgcgatggagaaggttttcaatttggaaata
gtgtatgaggtcaatgtgaagacagttcggctcactggattcaccatcggccaaacgggg
agtgttttgaaaagggtttcggcggaaaagctgcaaactattttagtttactcgagaaat
gtttctatcgataaacaggatgttactcggattaaaaataccatatccaccttcccgaaa
ttgcaaagaggtagcttccatgttgatattccaaatcctctcgaagttgccaaagttttt
gatgaaaactatttggatccaatggtggaggctccgatcgttctggaaagttctgatgaa
aattccaacttccatgtgtacatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTCATGTAGCACTAAGTTCTCGA 62 369 292 Antisense
GCAACCACACCACCAGGGTGCAATT 171 321 358 Antisense
ATTTGAATGCCACTCTTGCTAACGT 512 17 380 Antisense
AACCCCGAAGCTTGAACTCGATCTG 229 147 420 Antisense
AGACAGTTCGGCTCACTGGATTCAC 458 71 551 Antisense
ATTCACCATCGGCCAAACGGGGAGT 442 1 570 Antisense
ATATCCACCTTCCCGAAATTGCAAA 23 21 694 Antisense
CATGTTGATATTCCAAATCCTCTCG 32 211 730 Antisense
AATCCTCTCGAAGTTGCCAAAGTTT 632 167 745 Antisense
GAGGCTCCGATCGTTCTGGAAAGTT 696 405 799 Antisense
AATTCCAACTTCCATGTGTACATCA 164 179 832 Antisense
Sequence Source Affymetrix Proprietary Database