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[187086_at]

Description Y57G11C.31 /REP_DB=WormBase Gene ID /WP=CE14982 /TR=O18253 /GB=CAB16530.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 10      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 51      6grp_total > 03      4grp_total > 60      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 454
1 2 3 4 range
A 454
(3)
P 		343.6
(0.8)
P 		450.9
(2.9)
P 		155.8
(-3)
P 		298
B 397.9
(0.5)
P 		572.6
(3)
P 		470
(1.5)
P 		153.9
(-3)
P 		419
C 464.4
(1.1)
P 		434.5
(0.7)
P 		608.1
(3)
P 		158.8
(-3)
P 		449
avr 438.8
(1.8) 		450.2
(2) 		509.7
(3) 		156.2
(-3) 		354

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 411
1 2 3 4 5 6 range
A 481.2
(0.4)
P 		622.5
(2.9)
P 		625.5
(3)
P 		609.9
(2.7)
P 		457.9
(-0)
P 		291.1
(-3)
P 		334
B 701.8
(3)
P 		580.1
(1.2)
P 		520.4
(0.3)
P 		591.8
(1.4)
P 		648.5
(2.2)
P 		291.8
(-3)
P 		410
C 685.5
(3)
P 		576.7
(1.3)
P 		589.6
(1.5)
P 		631.2
(2.1)
P 		511.1
(0.2)
P 		308.8
(-3)
P 		377
avr 622.8
(3) 		593.1
(2.5) 		578.5
(2.2) 		611
(2.8) 		539.2
(1.5) 		297.2
(-3) 		326
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 189
1 2 3 4 range
A 165.3
(3)
P 		74.6
(-0.8)
P 		117.9
(1)
P 		22.8
(-3)
P 		143
B 126.9
(2.2)
P 		141.4
(3)
P 		108.9
(1.2)
P 		32.8
(-3)
P 		109
C 153.7
(1.1)
P 		124.9
(0.2)
P 		212
(3)
P 		26.8
(-3)
P 		185
avr 148.6
(3) 		113.6
(1.3) 		146.3
(2.9) 		27.5
(-3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 88.7
(-2.3)
P 		221.4
(3)
P 		136.2
(-0.4)
P 		154.7
(0.3)
P 		138.2
(-0.3)
P 		70.9
(-3)
P 		151
B 244.2
(2.3)
P 		193.1
(0.3)
P 		126.4
(-2.3)
P 		156.7
(-1.1)
P 		263.5
(3)
P 		108.8
(-3)
P 		155
C 254.1
(3)
P 		176
(-0.1)
P 		150.1
(-1.1)
P 		126.9
(-2.1)
P 		165.4
(-0.5)
P 		103.4
(-3)
P 		151
avr 195.7
(2.9) 		196.8
(3) 		137.6
(-0.5) 		146.1
(0) 		189
(2.5) 		94.4
(-3) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187086_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9373
Sequence Type Exemplar sequence
Representative Public ID Y57G11C.31 NCBI
Target Description Y57G11C.31 /REP_DB=WormBase Gene ID /WP=CE14982 /TR=O18253 /GB=CAB16530.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070374(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070374 NCBI Caenorhabditis elegans Y57G11C.31 (Y57G11C.31) mRNA, complete cds. 11/11 None
SNAP00000003453 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14685783:14687226:1 11/11 None
GENEFINDER00000003581 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14683008:14687282:1 11/11 None
Y57G11C.31 ENSEMBL cdna:known chromosome:CEL140:IV:14683008:14687366:1 gene:Y57G11C.31 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14683013-14687232(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57G11C.31
Entrez Gene 178396 Entrez gene
SwissProt O18253 EMBL-EBI
WormBase CE35691 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16530 Hypothetical protein Y57G11C.31 [Caenorhabditis elegans] ref|NP_502775.2| Y57G11C.31 [Caenorhabditis elegans] 0.0
blast CAE73925 Hypothetical protein CBG21540 [Caenorhabditis briggsae] 0.0
blast CAE73327 Hypothetical protein CBG20756 [Caenorhabditis briggsae] 0.0
blast CAE73327 Hypothetical protein CBG20756 [Caenorhabditis briggsae] 1.0E-175
blast CAB16530 Hypothetical protein Y57G11C.31 [Caenorhabditis elegans] ref|NP_502775.2| Y57G11C.31 [Caenorhabditis elegans] 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR005069 EMBL-EBI Protein of unknown function DUF271 1.0E-126
Pfam IPR005069 EMBL-EBI Protein of unknown function DUF271 5.8E-65
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502775.2 2 31-53,380-402
Y57G11C.31 2 31-53,380-402
SNAP00000003453 1 188-210
GENEFINDER00000003581 1 31-53
Sequence
Target Sequence 
>C. ELEGANS:187086_AT
tctggcgtaaaaacatcttcgacatgaactacgaagatgacatgtcatatgacgcgattt
tcgatcaattgggtagtgaagaagagcattcaatgagaaaagaatgggtgaacggagcca
atttcttcattcgagccaataatgatactcagctctttttcgagagaatgtctgagaaat
tggcacattggtatactcctgatatgggtattatgattcaacaatgccatacgtggaaga
agcctgtgtgtgcttacattcctcataatgttgtgtactcatgggaatggatgttcaccg
agcagaaagatccaccgtatttgatgcaattagactgtgaaactgacggtggatccaagt
taatgcagttgggacggtacgggttccactttgtgaatccagatggaacatgcaatgatc
aaaaagtagcacttgccaagggaaaaatggaaaacggaactgtcgaagtacaaatgtcaa
aaactcttccatcttggggacgtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGGCGTAAAAACATCTTCGACAT 305 607 671 Antisense
GACGCGATTTTCGATCAATTGGGTA 110 381 721 Antisense
GTGAACGGAGCCAATTTCTTCATTC 522 481 778 Antisense
AATGATACTCAGCTCTTTTTCGAGA 684 163 811 Antisense
GAAATTGGCACATTGGTATACTCCT 545 363 846 Antisense
CTGTGTGTGCTTACATTCCTCATAA 297 239 914 Antisense
GGGAATGGATGTTCACCGAGCAGAA 710 493 953 Antisense
GAAAGATCCACCGTATTTGATGCAA 102 361 975 Antisense
TGCAGTTGGGACGGTACGGGTTCCA 128 575 1034 Antisense
ACGGGTTCCACTTTGTGAATCCAGA 420 93 1049 Antisense
AAACTCTTCCATCTTGGGGACGTCT 36 63 1151 Antisense
Sequence Source Affymetrix Proprietary Database