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[187085_s_at] --- /// glutathione S-transferase

Description Y45G12C.2 /REP_DB=WormBase Gene ID /WP=CE21937 /TR=Q9N4X8 /GB=AAF60580.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_highest_8_8 > 10      4grp_high_8_8 > 55      6grp_highest_nonorm > 25      6grp_total > 52      4grp_total > 56      6grp_highest_sub > 03      6grp_cgc > 82      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4635
1 2 3 4 range
A 1571.1
(-2.1)
P 		2680.6
(-0.4)
P 		4806
(3)
P 		1028.2
(-3)
P 		3778
B 1312
(-3)
P 		3804.7
(1.2)
P 		4875.4
(3)
P 		1355.6
(-2.9)
P 		3563
C 1551
(-2.4)
P 		4284.9
(1.2)
P 		5663.6
(3)
P 		1125
(-3)
P 		4539
avr 1478
(-2.5) 		3590.1
(0.7) 		5115
(3) 		1169.6
(-3) 		3945

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6957
1 2 3 4 5 6 range
A 1933.9
(-2.2)
P 		4004.2
(-0.4)
P 		7930.7
(3)
P 		4342.7
(-0.1)
P 		2025.7
(-2.1)
P 		973.8
(-3)
P 		6957
B 2586.1
(-1.9)
P 		4294.1
(-0.3)
P 		7827.9
(3)
P 		3738
(-0.8)
P 		2982.8
(-1.5)
P 		1391
(-3)
P 		6437
C 2429.5
(-1.9)
P 		4601.9
(0.5)
P 		6805.8
(3)
P 		4023.6
(-0.1)
P 		2463.5
(-1.9)
P 		1442.2
(-3)
P 		5364
avr 2316.5
(-2) 		4300.1
(-0.1) 		7521.5
(3) 		4034.8
(-0.3) 		2490.7
(-1.8) 		1269
(-3) 		6253
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1824
1 2 3 4 range
A 572
(-0.7)
P 		581.9
(-0.7)
P 		1256.4
(3)
P 		150.5
(-3)
P 		1106
B 418.4
(-2.1)
P 		939.7
(1.6)
P 		1129.7
(3)
P 		288.9
(-3)
P 		841
C 513.4
(-1.9)
P 		1231.9
(0.5)
P 		1974
(3)
P 		189.7
(-3)
P 		1784
avr 501.3
(-1.6) 		917.8
(0.4) 		1453.4
(3) 		209.7
(-3) 		1244

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1664
1 2 3 4 5 6 range
A 356.5
(-2.5)
P 		1424.1
(1.8)
P 		1727.1
(3)
P 		1101.4
(0.5)
P 		611.3
(-1.5)
P 		237.1
(-3)
P 		1490
B 899.9
(-1.3)
P 		1429.3
(1)
P 		1900.8
(3)
P 		990.1
(-1)
P 		1211.9
(0)
P 		518.7
(-3)
P 		1382
C 900.5
(-1)
P 		1404.2
(1.4)
P 		1732.2
(3)
P 		809.1
(-1.4)
P 		797.2
(-1.5)
P 		482.8
(-3)
P 		1249
avr 719
(-1.7) 		1419.2
(1.4) 		1786.7
(3) 		966.9
(-0.6) 		873.5
(-1) 		412.9
(-3) 		1374
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187085_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15787
Sequence Type Exemplar sequence
Representative Public ID Y45G12C.2 NCBI
Target Description Y45G12C.2 /REP_DB=WormBase Gene ID /WP=CE21937 /TR=Q9N4X8 /GB=AAF60580.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071272(11), NM_071300(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071272 NCBI Caenorhabditis elegans F56A4.3 (F56A4.3) mRNA, complete cds. 11/11 None
NM_071300 NCBI Caenorhabditis elegans Glutathione S-Transferase family member (gst-10) (gst-10) mRNA, complete cds. 11/11 A 
SNAP00000032944 ENSEMBL cdna:SNAP chromosome:CEL140:V:2453255:2455808:1 11/11 None
GENEFINDER00000032958 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2453255:2453699:1 11/11 None
SNAP00000043317 ENSEMBL cdna:SNAP chromosome:CEL140:V:2561534:2564403:1 11/11 None
GENEFINDER00000043323 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2561534:2561978:1 11/11 None
F56A4.3 ENSEMBL cdna:known chromosome:CEL140:V:2453242:2455975:1 gene:F56A4.3 11/11 None
Y45G12C.2 ENSEMBL cdna:known chromosome:CEL140:V:2561521:2564525:1 gene:Y45G12C.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2561533-2564403(+) 100.0 100.0
Public Domain and Genome References
Gene Title
glutathione S-transferase
Gene Symbol gst-10
Ensembl F56A4.3
Y45G12C.2
Entrez Gene 178725 Entrez gene
186346 Entrez gene
SwissProt Q9N5R3 EMBL-EBI
Q9N4X8 EMBL-EBI
WormBase CE30150 Wormbase
CE21937 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1600415_AT similar to Glutathione S-transferase A3-3 (GST class-alpha) cfa
CANINE:1592963_AT similar to Glutathione S-transferase A3-3 (GST class-alpha) cfa
CANINE:1591191_AT similar to Glutathione S-transferase A3-3 (GST class-alpha) cfa
CANINE_2:CFAAFFX.4239.1.S1_S_AT similar to Glutathione S-transferase A3-3 (GST class-alpha) cfa
CHICKEN:GGA.8359.1.S1_AT glutathione S-transferase A3 gga
HG-U95AV2:1260_S_AT glutathione S-transferase A3 hs
HC-G110:1260_S_AT glutathione S-transferase A3 hs
HG-U133_PLUS_2:222102_AT glutathione S-transferase A3 hs
HG-U133A_2:222102_AT glutathione S-transferase A3 hs
HG-FOCUS:222102_AT glutathione S-transferase A3 hs
HG-U133A:222102_AT glutathione S-transferase A3 hs
HU35KSUBA:M14777_S_AT glutathione S-transferase A3 hs
HUGENEFL:X65727_CDS2_S_AT glutathione S-transferase A3 hs
U133_X3P:HS.102484.0.S1_3P_AT glutathione S-transferase A3 hs
HG-U95B:58023_AT glutathione S-transferase A3 hs
MU11KSUBB:MSA.727.0_S_AT glutathione S-transferase, alpha 3 mm
MG-U74AV2:93015_AT glutathione S-transferase, alpha 3 mm
MOE430A:1423436_AT glutathione S-transferase, alpha 3 mm
MOUSE430A_2:1423436_AT glutathione S-transferase, alpha 3 mm
MOUSE430_2:1423436_AT glutathione S-transferase, alpha 3 mm
MOE430A:1423437_AT glutathione S-transferase, alpha 3 mm
MOUSE430A_2:1423437_AT glutathione S-transferase, alpha 3 mm
MOUSE430_2:1423437_AT glutathione S-transferase, alpha 3 mm
MU19KSUBA:TC23238_F_AT Glutathione S-transferase, alpha 3, mRNA (cDNA clone MGC:13726 IMAGE:4210324) mm
MU19KSUBA:TC23238_I_AT Glutathione S-transferase, alpha 3, mRNA (cDNA clone MGC:13726 IMAGE:4210324) mm
MU19KSUBB:TC28888_AT Glutathione S-transferase, alpha 3, mRNA (cDNA clone MGC:13726 IMAGE:4210324) mm
MU19KSUBB:TC32014_AT Glutathione S-transferase, alpha 3, mRNA (cDNA clone MGC:13726 IMAGE:4210324) mm
RAT230_2:1371089_AT glutathione S-transferase Yc2 subunit rn
RAE230A:1371089_AT glutathione S-transferase Yc2 subunit rn
RT-U34:S82820MRNA_S_AT glutathione S-transferase Yc2 subunit rn
RG-U34A:S82820MRNA_S_AT glutathione S-transferase Yc2 subunit rn
RG-U34A:RC_AA945082_AT glutathione S-transferase Yc2 subunit rn
RG-U34A:S72506_S_AT glutathione S-transferase Yc2 subunit rn
Protein Similarities
Method ID Description E-Value
blast NP_503701 Glutathione S-Transferase family member (gst-10) [Caenorhabditis elegans] gb|AAF60580.1| Glutathione s-transferase protein 10 [Caenorhabditis elegans] sp|Q9N4X8|GSTPA_CAEEL Probable glutathione S-transferase P 10 (GST class-pi) 1.0E-121
blast NP_504894 Glutathione S-Transferase family member (gst-41) [Caenorhabditis elegans] gb|AAK72303.2| Glutathione s-transferase protein 41 [Caenorhabditis elegans] 1.0E-93
blast CAE58192 Hypothetical protein CBG01286 [Caenorhabditis briggsae] 2.0E-86
blast AAF39839 Hypothetical protein F56A4.3 [Caenorhabditis elegans] ref|NP_503673.2| F56A4.3 [Caenorhabditis elegans] 1.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 1.2E-14
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 2.7E-16
Sequence
Target Sequence 
>C. ELEGANS:187085_S_AT
aactttactacttcactattcgaggattcggagaatacatccgtcttctgttcctcgaca
atggtatcaaattcgaagacattcggttcgactacgaggggaatgaatggcaagagttta
aaaaaggaatgctccttggtcagttgccatgcttgaaggtggacgggcaagagattgtgc
agactggagcaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTTACTACTTCACTATTCGAGG 651 137 26 Antisense
TACTTCACTATTCGAGGATTCGGAG 363 643 34 Antisense
GTTCCTCGACAATGGTATCAAATTC 592 439 75 Antisense
GAAGACATTCGGTTCGACTACGAGG 286 339 100 Antisense
GACATTCGGTTCGACTACGAGGGGA 510 369 103 Antisense
CGACTACGAGGGGAATGAATGGCAA 110 245 114 Antisense
AAGGAATGCTCCTTGGTCAGTTGCC 449 161 149 Antisense
CTCCTTGGTCAGTTGCCATGCTTGA 450 235 157 Antisense
GTCAGTTGCCATGCTTGAAGGTGGA 436 465 164 Antisense
GAAGGTGGACGGGCAAGAGATTGTG 408 335 180 Antisense
AGAGATTGTGCAGACTGGAGCAATT 394 69 195 Antisense
Sequence Source Affymetrix Proprietary Database