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[187083_at]

Description Y57A10A.16 /REP_DB=WormBase Gene ID /WP=CE22619 /TR=Q9NA81 /GB=CAB55019.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 75      6grp_total > 59      4grp_total > 29      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 575
1 2 3 4 range
A 1020.1
(0.5)
P 		934.2
(-1.3)
P 		857.8
(-3)
P 		1134.1
(3)
P 		276
B 1135.9
(3)
P 		1089.7
(1.7)
P 		923.5
(-3)
P 		1123
(2.6)
P 		212
C 1428.2
(3)
P 		1109.3
(-0.3)
P 		853
(-3)
P 		1124.2
(-0.2)
P 		575
avr 1194.7
(3) 		1044.4
(0.2) 		878.1
(-3) 		1127.1
(1.7) 		317

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 402
1 2 3 4 5 6 range
A 926.2
(-0.8)
P 		940.9
(-0.5)
P 		1032.3
(1)
P 		1117.7
(2.5)
P 		795.2
(-3)
P 		1146.8
(3)
P 		352
B 1029.1
(2.3)
P 		780.4
(-2.7)
P 		764.7
(-3)
P 		917.1
(0)
P 		1065
(3)
P 		968.5
(1.1)
P 		300
C 1045.1
(1.1)
P 		919.1
(-0.8)
P 		1056.3
(1.3)
P 		777.7
(-3)
P 		1166.5
(3)
P 		919.1
(-0.8)
P 		389
avr 1000.1
(2.5) 		880.1
(-3) 		951.1
(0.2) 		937.5
(-0.4) 		1008.9
(2.9) 		1011.5
(3) 		131
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 307
1 2 3 4 range
A 371.4
(3)
P 		202.8
(-1.9)
P 		224.2
(-1.3)
P 		166
(-3)
P 		205
B 362.2
(3)
P 		269.1
(-0.8)
P 		214
(-3)
P 		239.3
(-2)
P 		148
C 472.8
(3)
P 		318.9
(-0.3)
P 		297.3
(-0.7)
P 		189.6
(-3)
P 		283
avr 402.1
(3) 		263.6
(-1.1) 		245.2
(-1.6) 		198.3
(-3) 		204

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 276
1 2 3 4 5 6 range
A 170.7
(-3)
P 		334.6
(3)
P 		224.8
(-1)
P 		283.5
(1.1)
P 		239.9
(-0.5)
P 		279.2
(1)
P 		164
B 358.1
(1.2)
P 		259.8
(-1.2)
P 		185.7
(-3)
P 		242.9
(-1.6)
P 		432.7
(3)
P 		361.1
(1.3)
P 		247
C 387.4
(3)
P 		280.5
(0.2)
P 		268.8
(-0.1)
P 		156.4
(-3)
P 		377.5
(2.7)
P 		307.7
(0.9)
P 		231
avr 305.4
(0.8) 		291.6
(0.2) 		226.4
(-3) 		227.6
(-2.9) 		350
(3) 		316
(1.3) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187083_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3200
Sequence Type Exemplar sequence
Representative Public ID Y57A10A.16 NCBI
Target Description Y57A10A.16 /REP_DB=WormBase Gene ID /WP=CE22619 /TR=Q9NA81 /GB=CAB55019.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064192(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064192 NCBI Caenorhabditis elegans Y57A10A.16 (Y57A10A.16) mRNA, complete cds. 11/11 None
GENEFINDER00000026059 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12200620:12202280:-1 11/11 None
Y57A10A.16 ENSEMBL cdna:known chromosome:CEL140:II:12200620:12202280:-1 gene:Y57A10A.16 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026023 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12200616-12202277(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57A10A.16
Entrez Gene 190338 Entrez gene
SwissProt Q9NA81 EMBL-EBI
WormBase CE22619 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247842_AT transport protein particle (TRAPP) component Bet3 family protein at
CANINE_2:CFAAFFX.123.1.S1_AT similar to Trafficking protein particle complex subunit 5 cfa
DROSOPHILA_2:1629954_AT dm
DROSGENOME1:152702_AT dm
U133_X3P:HS.108082.0.S1_3P_A_AT trafficking protein particle complex 5 hs
HG-U133_PLUS_2:225870_S_AT trafficking protein particle complex 5 hs
HG-U133B:225870_S_AT trafficking protein particle complex 5 hs
HG-U95C:48823_AT Trafficking protein particle complex 5 hs
HU35KSUBA:AA448101_AT Trafficking protein particle complex 5 hs
HU35KSUBC:RC_AA488196_AT Trafficking protein particle complex 5 hs
MU11KSUBA:AA673568_AT trafficking protein particle complex 5 mm
MU11KSUBB:MSA.7473.0_S_AT trafficking protein particle complex 5 mm
MG-U74AV2:94554_AT trafficking protein particle complex 5 mm
MOE430A:1418233_A_AT trafficking protein particle complex 5 mm
MOUSE430A_2:1418233_A_AT trafficking protein particle complex 5 mm
MOUSE430_2:1418233_A_AT trafficking protein particle complex 5 mm
MOE430A:1448999_AT trafficking protein particle complex 5 mm
MOUSE430A_2:1448999_AT trafficking protein particle complex 5 mm
MOUSE430_2:1448999_AT trafficking protein particle complex 5 mm
MU19KSUBA:TC15884_AT Trafficking protein particle complex 5 (Trappc5), mRNA mm
MU19KSUBB:TC34581_AT Trafficking protein particle complex 5 (Trappc5), mRNA mm
RG-U34C:RC_AI104034_AT similar to trafficking protein particle complex 5 rn
RAE230A:1373271_AT similar to trafficking protein particle complex 5 rn
RAT230_2:1373271_AT similar to trafficking protein particle complex 5 rn
RAE230B:1377987_AT similar to trafficking protein particle complex 5 rn
RAT230_2:1377987_AT similar to trafficking protein particle complex 5 rn
RAE230B:1384313_AT similar to trafficking protein particle complex 5 rn
RAT230_2:1384313_AT similar to trafficking protein particle complex 5 rn
YEAST_2:1769562_AT One of 10 subunits of the transport protein particle (TRAPP) complex of the cis-Golgi which mediates vesicle docking and fusion; involved in endoplasmic reticulum (ER) to Golgi membrane traffic Sc
Protein Similarities
Method ID Description E-Value
blast CAB55019 Hypothetical protein Y57A10A.16 [Caenorhabditis elegans] ref|NP_496593.1| Y57A10A.16 [Caenorhabditis elegans] 1.0E-101
blast CAE73468 Hypothetical protein CBG20919 [Caenorhabditis briggsae] 3.0E-97
blast XP_395045 PREDICTED: similar to ENSANGP00000016974 [Apis mellifera] 7.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR007194 EMBL-EBI Transport protein particle (TRAPP) component, Bet3 4.2E-74
Sequence
Target Sequence 
>C. ELEGANS:187083_AT
agatcaatctgtccacatttgccgtactcttctcagaaatggttctctacgcacaaaatc
gttcggaaaccgtaacggatattcatgataaaattgcgtcttatgggaaacaagtgggac
ttcgaatgtttgatattattactcttcgggaaaaaggatacaaacgggagaccaagttgc
tcggaatgctcatgttcattaaatcgactgtttggaagaatttgttcggaaaagaagctg
ataaattggagagatctaatgatgatcattgcacttatcttctaatcgaaaaggatccaa
tggtgaatacgtacatctcggtgccacgtgacaagggagtactcaactgtgcggcttttg
ccgccggaattgttgaagccattcttgagagcgcctcattcaaatgcaaagtgaccgccc
attggcacaacggaaccgcctacgtcattcaattcgacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATCAATCTGTCCACATTTGCCGT 435 65 65 Antisense
TTTGCCGTACTCTTCTCAGAAATGG 308 669 82 Antisense
GAAATGGTTCTCTACGCACAAAATC 377 361 100 Antisense
GATCATTGCACTTATCTTCTAATCG 8 421 328 Antisense
GGTGAATACGTACATCTCGGTGCCA 364 501 366 Antisense
GGTGCCACGTGACAAGGGAGTACTC 236 499 384 Antisense
TCAACTGTGCGGCTTTTGCCGCCGG 440 629 407 Antisense
TGCCGCCGGAATTGTTGAAGCCATT 556 583 423 Antisense
TGAAGCCATTCTTGAGAGCGCCTCA 49 575 438 Antisense
TGCAAAGTGACCGCCCATTGGCACA 26 577 469 Antisense
ACCGCCTACGTCATTCAATTCGACG 127 89 499 Antisense
Sequence Source Affymetrix Proprietary Database