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[187082_s_at]

Description K11D12.10 /REP_DB=WormBase Gene ID /WP=CE25944 /TR=O44627 /GB=AAB94221.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 33      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 51      6grp_total > 12      4grp_total > 31      6grp_highest_sub > 02      6grp_cgc > 62      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 475
1 2 3 4 range
A 638.3
(3)
P 		493.7
(-0.3)
P 		374.8
(-3)
P 		600.7
(2.1)
P 		264
B 747.1
(2.9)
P 		394.6
(-2.8)
P 		385.3
(-3)
P 		750.4
(3)
P 		365
C 850
(3)
P 		428.8
(-3)
P 		463.5
(-2.5)
P 		529.1
(-1.6)
P 		421
avr 745.1
(3) 		439
(-2.4) 		407.9
(-3) 		626.7
(0.9) 		337

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 602
1 2 3 4 5 6 range
A 595.5
(-0.9)
P 		989
(3)
P 		386.8
(-3)
P 		599.2
(-0.9)
P 		445.8
(-2.4)
P 		679.9
(-0.1)
P 		602
B 485.6
(-1.9)
P 		824.2
(3)
P 		789.4
(2.5)
P 		498.9
(-1.7)
P 		406
(-3)
P 		410.4
(-2.9)
P 		418
C 800
(2.8)
P 		530
(-1.6)
P 		812.8
(3)
P 		699.4
(1.1)
P 		640.4
(0.2)
P 		447.6
(-3)
P 		365
avr 627
(-0.3) 		781.1
(3) 		663
(0.5) 		599.2
(-0.8) 		497.4
(-3) 		512.6
(-2.7) 		284
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 232.4
(3)
P 		107.2
(-2.2)
P 		98
(-2.6)
P 		87.9
(-3)
P 		145
B 238.2
(3)
P 		97.4
(-2.7)
P 		89.3
(-3)
P 		159.9
(-0.2)
P 		149
C 281.4
(3)
P 		123.3
(-1.9)
P 		161.6
(-0.7)
P 		89.2
(-3)
P 		192
avr 250.7
(3) 		109.3
(-3) 		116.3
(-2.7) 		112.3
(-2.9) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 268
1 2 3 4 5 6 range
A 109.8
(-2.4)
P 		351.7
(3)
P 		84.2
(-3)
P 		152
(-1.5)
P 		134.5
(-1.9)
P 		165.5
(-1.2)
P 		268
B 169
(-1.4)
P 		274.4
(3)
P 		191.7
(-0.5)
P 		132.1
(-3)
P 		165
(-1.6)
P 		153
(-2.1)
P 		142
C 296.5
(3)
P 		161.7
(-2.2)
P 		206.9
(-0.4)
P 		140.6
(-3)
P 		207.2
(-0.4)
P 		149.8
(-2.6)
P 		156
avr 191.8
(-0.5) 		262.6
(3) 		160.9
(-2) 		141.6
(-3) 		168.9
(-1.6) 		156.1
(-2.3) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187082_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15016
Sequence Type Exemplar sequence
Representative Public ID K11D12.10 NCBI
Target Description K11D12.10 /REP_DB=WormBase Gene ID /WP=CE25944 /TR=O44627 /GB=AAB94221.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171456(11), NM_171928(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171456 NCBI Caenorhabditis elegans human MLK (Mixed Lineage Kinase) homolog family member (mlk-1) (mlk-1) mRNA, complete cds. 11/11 None
NM_171928 NCBI Caenorhabditis elegans human MLK (Mixed Lineage Kinase) homolog family member (mlk-1) (mlk-1) mRNA, complete cds. 11/11 None
K11D12.10b ENSEMBL cdna:known chromosome:CEL140:V:5056209:5064590:-1 gene:K11D12.10 11/11 A 
K11D12.10a ENSEMBL cdna:known chromosome:CEL140:V:5056593:5064590:-1 gene:K11D12.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5056592-5064590(-) 100.0 100.0
Public Domain and Genome References
Ensembl K11D12.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_741536 human MLK (Mixed Lineage Kinase) homolog family member (mlk-1) [Caenorhabditis elegans] gb|AAM15589.1| Human mlk (mixed lineage kinase) homolog protein 1, isoform b [Caenorhabditis elegans] 0.0
blast NP_741537 human MLK (Mixed Lineage Kinase) homolog family member (mlk-1) [Caenorhabditis elegans] gb|AAM15588.1| Human mlk (mixed lineage kinase) homolog protein 1, isoform a [Caenorhabditis elegans] 0.0
blast CAE64061 Hypothetical protein CBG08663 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001452 EMBL-EBI SH3 7.0E-15
Pfam IPR000719 EMBL-EBI Protein kinase 7.8E-53
Sequence
Target Sequence 
>C. ELEGANS:187082_S_AT
aggatttggtcacgggcggtcaattaatcaatccacgcagtattacccagttggcggcgg
ttgtgacgactacataccaattgttcaaaaaactgtgatcaagccaacagttggagaagt
cggtaattctccgtactcggaaaatatacggtgtgcaacaagaaatgtgcagaatcctca
gtatattcagtgcaagaaaaaccaaaatccaaggcgtatcccagcattgccaatgaaaat
tcaatcggaaagcaacttagtgacaagtggaatggtgttcacacctcgtgatgaacagct
aaacggaataggaaacagtctgagctcgttgtcactgaacgagccgcctgatattccggc
tcccttgccaccagtcgtcacctacccaataccagcatctctaatatcgccatcaaaccg
tgtttcaatgtccccgccgactcgaatggctccagtcttacccctcggcgcaatgtcttc
tccacgcataatgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGATTTGGTCACGGGCGGTCAATT 616 53 2121 Antisense
CAATCCACGCAGTATTACCCAGTTG 226 181 2149 Antisense
TTACCCAGTTGGCGGCGGTTGTGAC 669 625 2163 Antisense
GGCGGTTGTGACGACTACATACCAA 157 537 2176 Antisense
GAAGTCGGTAATTCTCCGTACTCGG 128 337 2236 Antisense
GGCGTATCCCAGCATTGCCAATGAA 465 541 2333 Antisense
GAAACAGTCTGAGCTCGTTGTCACT 533 355 2432 Antisense
CTGAACGAGCCGCCTGATATTCCGG 438 233 2455 Antisense
ATACCAGCATCTCTAATATCGCCAT 252 23 2509 Antisense
ATCAAACCGTGTTTCAATGTCCCCG 121 21 2532 Antisense
CAATGTCTTCTCCACGCATAATGGA 223 183 2591 Antisense
Sequence Source Affymetrix Proprietary Database