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[187080_at]

Description Y76B12C.2 /REP_DB=WormBase Gene ID /WP=CE25606 /TR=Q9N4C3 /GB=AAF36063.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 39      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 430
1 2 3 4 range
A 671.2
(3)
P 		339.1
(-1.8)
A 		347.7
(-1.7)
P 		256.7
(-3)
P 		415
B 509.2
(3)
P 		264.6
(-2.5)
A 		241.3
(-3)
A 		443.8
(1.5)
P 		268
C 481
(3)
P 		256.9
(-3)
A 		341.9
(-0.7)
P 		349.5
(-0.5)
P 		224
avr 553.8
(3) 		286.9
(-3) 		310.3
(-2.5) 		350
(-1.6) 		267

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 867
1 2 3 4 5 6 range
A 207.9
(-2.2)
A 		160.7
(-2.8)
A 		244.2
(-1.7)
M 		144
(-3)
A 		215
(-2.1)
A 		622.4
(3)
P 		478
B 227.5
(-1.8)
P 		187.4
(-2.2)
A 		238.5
(-1.7)
P 		201.9
(-2)
P 		99.1
(-3)
A 		731.2
(3)
P 		632
C 87
(-3)
A 		149.9
(-2.6)
A 		247.8
(-1.9)
M 		167.4
(-2.4)
A 		143.2
(-2.6)
A 		954.3
(3)
P 		867
avr 174.1
(-2.8) 		166
(-2.9) 		243.5
(-2.1) 		171.1
(-2.8) 		152.4
(-3) 		769.3
(3) 		617
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 244.4
(3)
P 		73.6
(-2)
A 		90.9
(-1.5)
P 		37.6
(-3)
P 		207
B 162.4
(3)
P 		65.3
(-2.5)
A 		55.9
(-3)
A 		94.6
(-0.8)
P 		107
C 159.2
(3)
P 		73.9
(-2.1)
A 		119.2
(0.6)
P 		58.9
(-3)
P 		100
avr 188.7
(3) 		70.9
(-2.7) 		88.7
(-1.8) 		63.7
(-3) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 287
1 2 3 4 5 6 range
A 38.3
(-2.9)
A 		57.1
(-1.9)
A 		53.2
(-2.1)
M 		36.5
(-3)
A 		64.9
(-1.5)
A 		151.5
(3)
P 		115
B 79.2
(-2)
P 		62.4
(-2.4)
A 		57.9
(-2.5)
P 		53.5
(-2.7)
P 		40.3
(-3)
A 		272.7
(3)
P 		232
C 32.2
(-3)
A 		45.7
(-2.7)
A 		63.1
(-2.4)
M 		33.7
(-3)
A 		46.3
(-2.7)
A 		319.5
(3)
P 		287
avr 49.9
(-2.7) 		55.1
(-2.6) 		58.1
(-2.5) 		41.2
(-3) 		50.5
(-2.7) 		247.9
(3) 		207
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187080_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10944
Sequence Type Exemplar sequence
Representative Public ID Y76B12C.2 NCBI
Target Description Y76B12C.2 /REP_DB=WormBase Gene ID /WP=CE25606 /TR=Q9N4C3 /GB=AAF36063.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067755(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067755 NCBI Caenorhabditis elegans Y76B12C.2 (Y76B12C.2) mRNA, complete cds. 11/11 None
SNAP00000007752 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1979987:2034887:1 11/11 None
GENEFINDER00000007759 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1998205:2007891:1 11/11 None
Y76B12C.2 ENSEMBL cdna:known chromosome:CEL140:IV:1993090:2008992:1 gene:Y76B12C.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1993095-2007897(+) 98.95 100.0
Public Domain and Genome References
Gene Title
Ensembl Y76B12C.2
Entrez Gene 177002 Entrez gene
SwissProt Q9N4C3 EMBL-EBI
WormBase CE31668 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6289 nucleotide-excision repair inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3684 damaged DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF36063 Hypothetical protein Y76B12C.2 [Caenorhabditis elegans] ref|NP_500156.2| Y76B12C.2 [Caenorhabditis elegans] 0.0
blast CAE70290 Hypothetical protein CBG16810 [Caenorhabditis briggsae] 0.0
blast AAP82631 Hypothetical protein Y76B12C.6 [Caenorhabditis elegans] ref|NP_001023581.1| Y76B12C.6b [Caenorhabditis elegans] 0.0
blast NP_001023580 Y76B12C.6a [Caenorhabditis elegans] 0.0
blast CAH90958 hypothetical protein [Pongo pygmaeus] 1.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR004583 EMBL-EBI DNA repair protein Rad4 2.3E-74
Pfam IPR004583 EMBL-EBI DNA repair protein Rad4 2.3E-74
Pfam IPR004583 EMBL-EBI DNA repair protein Rad4 2.3E-74
Sequence
Target Sequence 
>C. ELEGANS:187080_AT
atccgcgtattcctgttgaagatcgagaggacaagtttctggatgtgtatggatattggc
agacggaaaaatatcgaagaccaccgttgaaaaatggtaaaattccgcacaacgagtatg
gcaacgtgtacatgtttaatgaaaatatgtgtccactggattgcacttatctaaaactat
caggattggttcaaatcagtcgaaaattgggaaaacagtgcattccagcagttgtcggat
gggcttttgacggtggattcacgcatcctgttatcgacggagcaattgtgcttgaaaagg
acgccattgattttatcaatgcttgggagaagctggagtccggaagagccgagaaagagg
aaaaacaacgcgtcgaaaaaatccacgaaaactggaaaaagttgatcaaaggaatgctgc
gtctcgcatacgtccgaaaacaatttggacatcccgcggcggaaaaaccgacaaaacgac
agaaaatcggtggaaaaaccgaagaaattgaagaaaatgaaggtggtgctggacccccgt
cttcggtagatcatatcactgataacacagaacagatcacaccgatgcatggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCGCGTATTCCTGTTGAAGATCG 580 37 2420 Antisense
AATTCCGCACAACGAGTATGGCAAC 659 177 2520 Antisense
GTGTCCACTGGATTGCACTTATCTA 617 487 2568 Antisense
CGGATGGGCTTTTGACGGTGGATTC 278 243 2655 Antisense
TCACGCATCCTGTTATCGACGGAGC 87 627 2678 Antisense
GAAGCTGGAGTCCGGAAGAGCCGAG 71 343 2748 Antisense
GATCAAAGGAATGCTGCGTCTCGCA 613 421 2823 Antisense
CGTCTCGCATACGTCCGAAAACAAT 587 245 2839 Antisense
AAATGAAGGTGGTGCTGGACCCCCG 39 3 2934 Antisense
ACCCCCGTCTTCGGTAGATCATATC 342 89 2952 Antisense
GAACAGATCACACCGATGCATGGAT 548 351 2989 Antisense
Sequence Source Affymetrix Proprietary Database