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[187079_at]

Description Y57G11C.33 /REP_DB=WormBase Gene ID /WP=CE24475 /TR=Q9U204 /GB=CAB54456.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 08      6grp_total > 09      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 231
1 2 3 4 range
A 285.8
(3)
P 		176.6
(0.2)
A 		54.7
(-3)
A 		213.7
(1.1)
A 		231
B 241.5
(3)
A 		134.7
(-2.9)
A 		143.2
(-2.4)
A 		132.5
(-3)
M 		109
C 223.7
(3)
P 		138.9
(-1.8)
A 		176.8
(0.4)
P 		117.5
(-3)
A 		106
avr 250.3
(3) 		150.1
(-1.8) 		124.9
(-3) 		154.6
(-1.6) 		125

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 242.6
(3)
P 		166.9
(-3)
P 		189.6
(-1.2)
P 		219.1
(1.1)
P 		194.6
(-0.8)
P 		174.3
(-2.4)
P 		76
B 261.9
(1.2)
P 		155.6
(-3)
A 		308.2
(3)
M 		209
(-0.9)
M 		253.4
(0.8)
P 		180.7
(-2)
P 		153
C 265.9
(0.7)
P 		199.9
(-1.9)
P 		171
(-3)
A 		326.3
(3)
P 		271.5
(0.9)
P 		229.1
(-0.8)
P 		155
avr 256.8
(3) 		174.1
(-3) 		222.9
(0.5) 		251.5
(2.6) 		239.8
(1.8) 		194.7
(-1.5) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 104.1
(3)
P 		38.3
(-1.4)
A 		14.3
(-3)
A 		31.3
(-1.9)
A 		90
B 77
(3)
A 		33.3
(-2.4)
A 		33.2
(-2.4)
A 		28.2
(-3)
M 		49
C 74.1
(3)
P 		39.9
(-0.8)
A 		61.6
(1.6)
P 		19.8
(-3)
A 		54
avr 85.1
(3) 		37.2
(-1.9) 		36.4
(-2) 		26.4
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 44.7
(-1.9)
P 		59.4
(3)
P 		41.3
(-3)
P 		55.6
(1.7)
P 		58.7
(2.8)
P 		42.4
(-2.6)
P 		18
B 91.1
(1.6)
P 		51.8
(-3)
A 		74.9
(-0.3)
M 		55.4
(-2.6)
M 		103
(3)
P 		67.4
(-1.2)
P 		51
C 98.6
(3)
P 		61
(-1.1)
P 		43.5
(-3)
A 		65.6
(-0.6)
P 		87.8
(1.8)
P 		76.7
(0.6)
P 		55
avr 78.1
(2) 		57.4
(-2.2) 		53.2
(-3) 		58.9
(-1.9) 		83.2
(3) 		62.2
(-1.2) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187079_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9182
Sequence Type Exemplar sequence
Representative Public ID Y57G11C.33 NCBI
Target Description Y57G11C.33 /REP_DB=WormBase Gene ID /WP=CE24475 /TR=Q9U204 /GB=CAB54456.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070373(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070373 NCBI Caenorhabditis elegans Y57G11C.33 (Y57G11C.33) mRNA, complete cds. 10/11 None
SNAP00000003449 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14657051:14657802:1 10/11 None
GENEFINDER00000003585 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14655636:14657848:1 10/11 None
Y57G11C.33 ENSEMBL cdna:known chromosome:CEL140:IV:14657044:14657802:1 gene:Y57G11C.33 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14657056-14657771(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57G11C.33
Entrez Gene 178394 Entrez gene
SwissProt Q9U204 EMBL-EBI
WormBase CE35693 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1632332_AT dm
DROSGENOME1:141446_AT dm
U133_X3P:HS.125374.0.A1_3P_AT chromosome 10 open reading frame 132 hs
HG-U133_PLUS_2:228068_AT chromosome 10 open reading frame 132 hs
HG-U133B:228068_AT chromosome 10 open reading frame 132 hs
HG-U95E:90036_AT chromosome 10 open reading frame 132 hs
MG-U74BV2:105864_AT RIKEN cDNA 4933417O08 gene mm
MOE430B:1453297_AT RIKEN cDNA 4933417O08 gene mm
MOUSE430_2:1453297_AT RIKEN cDNA 4933417O08 gene mm
MOE430B:1439546_AT RIKEN cDNA 4933417O08 gene mm
MOUSE430_2:1439546_AT RIKEN cDNA 4933417O08 gene mm
Protein Similarities
Method ID Description E-Value
blast CAB54456 Hypothetical protein Y57G11C.33 [Caenorhabditis elegans] ref|NP_502774.2| Y57G11C.33 [Caenorhabditis elegans] 1.0E-98
blast CAB54456 Hypothetical protein Y57G11C.33 [Caenorhabditis elegans] ref|NP_502774.2| Y57G11C.33 [Caenorhabditis elegans] 2.0E-94
blast CAB54456 Hypothetical protein Y57G11C.33 [Caenorhabditis elegans] ref|NP_502774.2| Y57G11C.33 [Caenorhabditis elegans] 2.0E-78
blast CAE73927 Hypothetical protein CBG21543 [Caenorhabditis briggsae] 1.0E-72
blast CAE73927 Hypothetical protein CBG21543 [Caenorhabditis briggsae] 1.0E-68
blast CAE73927 Hypothetical protein CBG21543 [Caenorhabditis briggsae] 6.0E-62
blast EAA08561 ENSANGP00000020436 [Anopheles gambiae str. PEST] ref|XP_312998.2| ENSANGP00000020436 [Anopheles gambiae str. PEST] 4.0E-21
blast EAA08561 ENSANGP00000020436 [Anopheles gambiae str. PEST] ref|XP_312998.2| ENSANGP00000020436 [Anopheles gambiae str. PEST] 1.0E-20
Sequence
Target Sequence 
>C. ELEGANS:187079_AT
ccggggacgatggctcaaatgcgaaatggcacaagcggcggcgacaaacgccaatacgag
acagaagtgataattttaaatcaatgcagaaagttaaatggtcagatcttcatccaacgg
gactactcgaaaggcctcgacgtgcagtttgaggctgaatatccggcaagattaactgaa
aaagtgccacgcgacgtctgggagaacacaattgtcaggataaataggatatttgcagac
gctgaagcgatcacgcctcaaacgattttcgagacggtgctgggctgtttcacgtgctac
gcctcctacgccatcacaaaatccacgtatcggcggaaactcgacgagctgcaagagttt
ctgaatcgagaaaatcgagaaatctatcatcacgtcggatttcacatcagaaatcccatg
gagagaggcttgagagtggtgaggcggtggaaaattgtcagttttctaagcttaaattat
cgattttcagctcgaaatttccctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGGGGACGATGGCTCAAATGCGAA 577 263 25 Antisense
AAATGGCACAAGCGGCGGCGACAAA 583 119 48 Antisense
GATCTTCATCCAACGGGACTACTCG 321 419 129 Antisense
GAAAGGCCTCGACGTGCAGTTTGAG 183 361 153 Antisense
TGCCACGCGACGTCTGGGAGAACAC 88 587 209 Antisense
GCAGACGCTGAAGCGATCACGCCTC 189 313 259 Antisense
CGATCACGCCTCAAACGATTTTCGA 559 247 272 Antisense
TTTCGAGACGGTGCTGGGCTGTTTC 52 669 291 Antisense
GTATCGGCGGAAACTCGACGAGCTG 312 453 351 Antisense
ATCATCACGTCGGATTTCACATCAG 110 31 410 Antisense
GATTTTCAGCTCGAAATTTCCCTGC 328 429 506 Antisense
Sequence Source Affymetrix Proprietary Database