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[187078_at]

Description Y45F10D.11 /REP_DB=WormBase Gene ID /WP=CE16649 /TR=O62481 /GB=CAA16386.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 72      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 63      6grp_total > 61      4grp_total > 60      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 324
1 2 3 4 range
A 534.2
(-0.9)
P 		517.2
(-1.4)
P 		681.2
(3)
P 		457.8
(-3)
P 		223
B 561.9
(1.8)
P 		596.2
(3)
P 		582.9
(2.6)
P 		418.1
(-3)
P 		178
C 526.2
(3)
P 		451.6
(0.3)
P 		525.9
(3)
P 		357.3
(-3)
P 		169
avr 540.8
(1.2) 		521.7
(0.6) 		596.7
(3) 		411.1
(-3) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 577
1 2 3 4 5 6 range
A 529
(-3)
P 		561.9
(-1.9)
P 		702
(3)
P 		680.9
(2.3)
P 		644.7
(1)
P 		574.7
(-1.4)
P 		173
B 470.8
(-3)
P 		558.4
(-1.9)
P 		647.9
(-0.7)
P 		936.3
(3)
P 		507.2
(-2.5)
P 		518.3
(-2.4)
P 		466
C 359
(-3)
P 		775.5
(3)
P 		702.9
(2)
P 		705.8
(2)
P 		448.4
(-1.7)
P 		600.6
(0.5)
P 		417
avr 452.9
(-3) 		631.9
(0.3) 		684.3
(1.3) 		774.3
(3) 		533.4
(-1.5) 		564.5
(-0.9) 		321
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 194.5
(3)
P 		112.3
(-0.9)
P 		178.1
(2.2)
P 		67
(-3)
P 		128
B 179.2
(3)
P 		147.3
(0.9)
P 		135.1
(0.1)
P 		89.1
(-3)
P 		90
C 174.2
(2.6)
P 		129.8
(0.4)
P 		183.3
(3)
P 		60.3
(-3)
P 		123
avr 182.6
(3) 		129.8
(0.1) 		165.5
(2.1) 		72.1
(-3) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 97.5
(-3)
P 		199.8
(3)
P 		152.9
(0.2)
P 		172.7
(1.4)
P 		194.5
(2.7)
P 		139.9
(-0.5)
P 		102
B 163.8
(-2.6)
P 		185.9
(-1.1)
P 		157.3
(-3)
P 		248
(3)
P 		206.1
(0.2)
P 		193.3
(-0.6)
P 		91
C 133.1
(-3)
P 		236.6
(3)
P 		178.9
(-0.3)
P 		141.9
(-2.5)
P 		145.1
(-2.3)
P 		201
(0.9)
P 		104
avr 131.5
(-3) 		207.4
(3) 		163
(-0.5) 		187.5
(1.4) 		181.9
(1) 		178.1
(0.7) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187078_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8391
Sequence Type Exemplar sequence
Representative Public ID Y45F10D.11 NCBI
Target Description Y45F10D.11 /REP_DB=WormBase Gene ID /WP=CE16649 /TR=O62481 /GB=CAA16386.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070256(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070256 NCBI Caenorhabditis elegans Y45F10D.11 (Y45F10D.11) mRNA, complete cds. 11/11 None
SNAP00000025706 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13782412:13785613:-1 11/11 None
GENEFINDER00000025730 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13782412:13783551:-1 11/11 None
Y45F10D.11 ENSEMBL cdna:known chromosome:CEL140:IV:13782412:13785613:-1 gene:Y45F10D.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13782417-13785619(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y45F10D.11
Entrez Gene 189927 Entrez gene
SwissProt O62481 EMBL-EBI
WormBase CE16649 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1605356_AT similar to lactamase, beta cfa
CANINE:1605539_AT similar to lactamase, beta cfa
CANINE_2:CFAAFFX.25961.1.S1_AT similar to lactamase, beta cfa
CHICKEN:GGAAFFX.2189.2.S1_S_AT lactamase, beta gga
HU35KSUBB:RC_F10077_AT lactamase, beta hs
U133_X3P:HS2.374554.2.S1_3P_X_AT lactamase, beta hs
U133_X3P:HS2.374554.2.S1_3P_AT lactamase, beta hs
U133_X3P:HS.293885.0.A1_3P_AT lactamase, beta hs
HG-U133_PLUS_2:1552485_AT lactamase, beta hs
HG-U133_PLUS_2:1552486_S_AT lactamase, beta hs
HG-U133_PLUS_2:226354_AT lactamase, beta hs
HG-U133B:226354_AT lactamase, beta hs
HG-U95C:63373_AT lactamase, beta hs
HG-U95E:83479_AT lactamase, beta hs
HG-U95E:67237_I_AT Lactamase, beta hs
HG-U95E:67239_R_AT Lactamase, beta hs
HU35KSUBA:D61871_R_AT Lactamase, beta hs
MG-U74BV2:113025_AT lactamase, beta mm
MG-U74BV2:110647_AT lactamase, beta mm
MG-U74BV2:164557_F_AT lactamase, beta mm
MOE430A:1449014_AT lactamase, beta mm
MOUSE430A_2:1449014_AT lactamase, beta mm
MOUSE430_2:1449014_AT lactamase, beta mm
MU19KSUBC:TC41311_AT Lactamase, beta (Lactb), mRNA mm
RG-U34B:RC_AI011350_AT lactamase, beta (predicted) rn
RAE230A:1375818_AT lactamase, beta (predicted) rn
RAT230_2:1375818_AT lactamase, beta (predicted) rn
RG-U34B:RC_AA963075_AT Lactamase, beta (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA16386 Hypothetical protein Y45F10D.11 [Caenorhabditis elegans] ref|NP_502657.1| Y45F10D.11 [Caenorhabditis elegans] 0.0
blast CAE74593 Hypothetical protein CBG22374 [Caenorhabditis briggsae] 1.0E-172
blast CAA16386 Hypothetical protein Y45F10D.11 [Caenorhabditis elegans] ref|NP_502657.1| Y45F10D.11 [Caenorhabditis elegans] 1.0E-162
blast CAA16386 Hypothetical protein Y45F10D.11 [Caenorhabditis elegans] ref|NP_502657.1| Y45F10D.11 [Caenorhabditis elegans] 1.0E-140
blast CAE74593 Hypothetical protein CBG22374 [Caenorhabditis briggsae] 1.0E-122
blast CAE74593 Hypothetical protein CBG22374 [Caenorhabditis briggsae] 1.0E-105
blast CAF98295 unnamed protein product [Tetraodon nigroviridis] 7.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR001466 EMBL-EBI Beta-lactamase 4.4E-78
Pfam IPR001466 EMBL-EBI Beta-lactamase 4.6E-42
Pfam IPR001466 EMBL-EBI Beta-lactamase 2.4E-29
Sequence
Target Sequence 
>C. ELEGANS:187078_AT
gaaaaacctggctccaaattctcctacaccacatacggattgacacttgccggtgctgtt
cttgaaaaatgttcaggaaaaacatatagacagcttgcaaatcaattattttcggatcta
ggaatgagaaatacacaactggatacaaaagagaaaattgttccgggaagggctagctac
taccagcgaaattcgaaaaacattctggaaaactgtccggaagttgactgctccaacaaa
ttcgccggcggtggaatcatctccaacaccaccgatcttctgatcatcgccaacgccatc
cttcacagtattctgtcggattccaagaattgtctgctacaacgagaaactattcgaaaa
ttcctggaaaagcaagtcccagttgactcgaaaacttcgacaggcctcggatggtttcta
gtggacggaaaagatctgaaatcaattgatggaaatatctccaactcttcattcttctac
cacaccggagcagctgtcggagcttcttcagtgcttcttgtaaatacatcttccggtgtt
tgtgtggccatcctgtgtaaccttcaaaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAAACCTGGCTCCAAATTCTCCT 31 355 610 Antisense
AATTCTCCTACACCACATACGGATT 411 177 626 Antisense
ACGGATTGACACTTGCCGGTGCTGT 358 95 644 Antisense
TTCCGGGAAGGGCTAGCTACTACCA 646 693 770 Antisense
ACTGTCCGGAAGTTGACTGCTCCAA 88 97 821 Antisense
GCGGTGGAATCATCTCCAACACCAC 94 293 857 Antisense
CGCCATCCTTCACAGTATTCTGTCG 631 257 903 Antisense
CGACAGGCCTCGGATGGTTTCTAGT 519 249 1007 Antisense
GAGCTTCTTCAGTGCTTCTTGTAAA 392 387 1109 Antisense
TACATCTTCCGGTGTTTGTGTGGCC 413 641 1134 Antisense
GCCATCCTGTGTAACCTTCAAAATA 71 281 1156 Antisense
Sequence Source Affymetrix Proprietary Database