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[187077_s_at]

Description Y105C5B.19 /REP_DB=WormBase Gene ID /WP=CE24068 /TR=Q9NAM2 /GB=CAB54365.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 56      6grp_highest_nonorm > 90      6grp_total > 56      4grp_total > 62      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 109.9
(3)
P 		84.5
(0.6)
P 		78.1
(0)
P 		46
(-3)
A 		64
B 111.2
(3)
P 		46.4
(-2.8)
A 		99.5
(1.9)
P 		44.6
(-3)
A 		67
C 127.4
(3)
P 		87.6
(-0.1)
P 		112.9
(1.9)
P 		49.3
(-3)
A 		78
avr 116.2
(3) 		72.8
(-0.7) 		96.8
(1.3) 		46.6
(-3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 114.4
(-1.5)
P 		138.9
(0.7)
P 		97.9
(-3)
P 		105.2
(-2.3)
P 		110.5
(-1.9)
P 		164.3
(3)
P 		66
B 129.5
(-0.4)
P 		128
(-0.7)
P 		125.8
(-1)
P 		138.3
(0.9)
P 		112.3
(-3)
P 		152.7
(3)
P 		40
C 122
(-1.8)
P 		165.5
(3)
P 		115.3
(-2.5)
P 		125.2
(-1.4)
P 		111
(-3)
P 		142.5
(0.5)
P 		55
avr 122
(-1.5) 		144.1
(1.7) 		113
(-2.8) 		122.9
(-1.3) 		111.3
(-3) 		153.2
(3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 40
(3)
P 		18.3
(-0.9)
P 		20.4
(-0.5)
P 		6.7
(-3)
A 		33
B 35.4
(3)
P 		11.5
(-2.5)
A 		23.1
(0.2)
P 		9.5
(-3)
A 		26
C 42.2
(3)
P 		25.2
(-0)
P 		39.3
(2.5)
P 		8.3
(-3)
A 		34
avr 39.2
(3) 		18.3
(-1) 		27.6
(0.8) 		8.2
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 21.1
(-3)
P 		49.4
(3)
P 		21.3
(-3)
P 		26.7
(-1.8)
P 		33.3
(-0.4)
P 		40
(1)
P 		28
B 45.1
(0.3)
P 		42.6
(-0.3)
P 		30.6
(-3)
P 		36.6
(-1.6)
P 		45.6
(0.4)
P 		56.9
(3)
P 		26
C 45.2
(1.7)
P 		50.5
(3)
P 		29.3
(-2)
P 		25.2
(-3)
P 		35.9
(-0.5)
P 		47.7
(2.3)
P 		25
avr 37.1
(-0.2) 		47.5
(2.8) 		27.1
(-3) 		29.5
(-2.3) 		38.3
(0.2) 		48.2
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187077_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9337
Sequence Type Exemplar sequence
Representative Public ID Y105C5B.19 NCBI
Target Description Y105C5B.19 /REP_DB=WormBase Gene ID /WP=CE24068 /TR=Q9NAM2 /GB=CAB54365.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070507(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070507 NCBI Caenorhabditis elegans Y105C5B.19 (Y105C5B.19) mRNA, complete cds. 11/11 None
SNAP00000018403 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15981639:15983931:-1 11/11 None
GENEFINDER00000018433 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15981639:15983931:-1 11/11 None
Y105C5B.19 ENSEMBL cdna:known chromosome:CEL140:IV:15981534:15983931:-1 gene:Y105C5B.19 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15981644-15983937(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105C5B.19
Entrez Gene 178450 Entrez gene
SwissProt Q9NAM2 EMBL-EBI
WormBase CE24068 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB54365 Hypothetical protein Y105C5B.19 [Caenorhabditis elegans] ref|NP_502908.1| Y105C5B.19 [Caenorhabditis elegans] 0.0
blast CAB70252 Hypothetical protein M199.2 [Caenorhabditis elegans] ref|NP_502824.1| M199.2 [Caenorhabditis elegans] 0.0
blast CAB05725 Hypothetical protein F43D2.2 [Caenorhabditis elegans] ref|NP_506617.1| F43D2.2 [Caenorhabditis elegans] 2.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 2.2E-17
Sequence
Target Sequence 
>C. ELEGANS:187077_S_AT
ggcattctcaattgactcagccgagaagtttgacagagctttgacgttgcccagcaggaa
atggttcatgatttccgatgttgtgacggatggagatgtgtcgaattggtcgacggctaa
cttggtgactcttgtgagagctctggcgagaacggttttcgataaggttgccattgcgga
cccccatatgatgtgctacgcaacttcacaaaacgcttctacatatattcccatcgctag
ggactttttcgaagggtttgctgagtacatactcggtgggttcggcgaagaacaatcgcg
agacctgaagtttcgagtgaggaagctggtcaccgacgttatgggcaataagttagaccg
tgtgagaggccgccacaacaaaatgtatggaaacgaagcaagtgaagatgccacaagatg
gctccgagagcaactccgcaaggaggatggagagctcaaagaatcccgactaattttccc
aaatggct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCATTCTCAATTGACTCAGCCGAG 571 537 882 Antisense
TTGACAGAGCTTTGACGTTGCCCAG 172 705 911 Antisense
GGTCGACGGCTAACTTGGTGACTCT 284 501 989 Antisense
GAGAGCTCTGGCGAGAACGGTTTTC 625 393 1017 Antisense
CGATAAGGTTGCCATTGCGGACCCC 207 249 1041 Antisense
ACGCAACTTCACAAAACGCTTCTAC 375 91 1079 Antisense
GTACATACTCGGTGGGTTCGGCGAA 197 447 1146 Antisense
GAACAATCGCGAGACCTGAAGTTTC 332 351 1171 Antisense
TGAGGAAGCTGGTCACCGACGTTAT 530 567 1199 Antisense
AAGATGGCTCCGAGAGCAACTCCGC 394 155 1296 Antisense
TCCCGACTAATTTTCCCAAATGGCT 233 595 1345 Antisense
Sequence Source Affymetrix Proprietary Database