[Home] | [Total List]

[187076_at]

Description W10G11.11 /REP_DB=WormBase Gene ID /WP=CE14820 /TR=O61212 /GB=AAG24218.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 56      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 125
1 2 3 4 range
A 16.1
(-3)
A 		19.4
(-2.8)
A 		139.9
(3)
A 		102.3
(1.2)
A 		124
B 67.8
(0.1)
A 		115.8
(3)
A 		73.6
(0.5)
A 		15.2
(-3)
A 		101
C 70.8
(2.8)
A 		73
(3)
A 		53.9
(0.8)
A 		19.8
(-3)
A 		53
avr 51.6
(-2.2) 		69.4
(0.3) 		89.1
(3) 		45.8
(-3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 80.3
(1.4)
A 		38.7
(-1.3)
A 		45.4
(-0.9)
A 		13.7
(-3)
A 		58.8
(0)
A 		103.7
(3)
A 		90
B 56.5
(1.4)
A 		72.1
(3)
A 		15
(-2.9)
A 		37.2
(-0.6)
A 		64.4
(2.2)
A 		14.2
(-3)
A 		58
C 86.8
(3)
A 		74.4
(2)
A 		54.6
(0.5)
A 		73.4
(2)
A 		49.3
(0.1)
A 		8.6
(-3)
A 		78
avr 74.5
(3) 		61.7
(0.9) 		38.3
(-3) 		41.4
(-2.5) 		57.5
(0.2) 		42.2
(-2.4) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 5.9
(-2.7)
A 		4.2
(-3)
A 		36.6
(3)
A 		15
(-1)
A 		32
B 21.6
(1.3)
A 		28.6
(3)
A 		17
(0.3)
A 		3.2
(-3)
A 		25
C 23.4
(3)
A 		21
(2.3)
A 		18.8
(1.6)
A 		3.3
(-3)
A 		20
avr 17
(0.5) 		17.9
(0.8) 		24.1
(3) 		7.2
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 14.8
(0.1)
A 		13.8
(-0.2)
A 		9.9
(-1.2)
A 		3.5
(-3)
A 		17.8
(1)
A 		25.2
(3)
A 		22
B 19.7
(1.3)
A 		24
(2.4)
A 		3.6
(-3)
A 		9.8
(-1.4)
A 		26.2
(3)
A 		5.3
(-2.5)
A 		23
C 32.2
(3)
A 		22.7
(1.1)
A 		13.9
(-0.7)
A 		14.8
(-0.6)
A 		15.9
(-0.3)
A 		2.9
(-3)
A 		29
avr 22.2
(3) 		20.2
(2.1) 		9.1
(-3) 		9.4
(-2.9) 		20
(2) 		11.1
(-2.1) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187076_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5400
Sequence Type Exemplar sequence
Representative Public ID W10G11.11 NCBI
Target Description W10G11.11 /REP_DB=WormBase Gene ID /WP=CE14820 /TR=O61212 /GB=AAG24218.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062186(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062186 NCBI Caenorhabditis elegans W10G11.11 (W10G11.11) mRNA, complete cds. 11/11 None
SNAP00000013268 ENSEMBL cdna:SNAP chromosome:CEL140:II:3580077:3581427:1 11/11 None
GENEFINDER00000013271 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3580077:3581427:1 11/11 None
W10G11.11 ENSEMBL cdna:known chromosome:CEL140:II:3580077:3581427:1 gene:W10G11.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3580075-3581426(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W10G11.11
Entrez Gene 189341 Entrez gene
SwissProt O61212 EMBL-EBI
WormBase CE14820 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24218 Hypothetical protein W10G11.11 [Caenorhabditis elegans] ref|NP_494587.1| W10G11.11 [Caenorhabditis elegans] 1.0E-175
blast AAB65273 Hypothetical protein F29A7.3 [Caenorhabditis elegans] ref|NP_494350.2| F29A7.3 [Caenorhabditis elegans] 2.0E-53
blast CAB04192 Hypothetical protein F26F2.6 [Caenorhabditis elegans] ref|NP_507971.2| F26F2.6 [Caenorhabditis elegans] 3.0E-40
Sequence
Target Sequence 
>C. ELEGANS:187076_AT
tatgctgtcataccctgaagcggtcggaaattgtacacttctcggaggagacggtcttat
gacaataccttcgtcggatttcgccagtcaaataaaacaaaatcaaaacagtactcagag
ttccaccgtctatttcattggacttacgagacccgatgattcttctaacgacaactgggt
atggacgcttcccgatctgaaaattgactccagcccattacctccttggagttttcctcc
ttcactgaatgtggaagcgatttgggccgagaactgtgctttagtgtctattgaggcaga
cccgacgaaatctcttttgcacgctacactatgccagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGCTGTCATACCCTGAAGCGGTC 200 651 588 Antisense
TGACAATACCTTCGTCGGATTTCGC 175 573 647 Antisense
ACAGTACTCAGAGTTCCACCGTCTA 346 107 695 Antisense
GAGACCCGATGATTCTTCTAACGAC 521 391 735 Antisense
CAACTGGGTATGGACGCTTCCCGAT 387 187 759 Antisense
TCTGAAAATTGACTCCAGCCCATTA 660 603 783 Antisense
CAGCCCATTACCTCCTTGGAGTTTT 227 81 798 Antisense
GTTTTCCTCCTTCACTGAATGTGGA 271 447 818 Antisense
GCGATTTGGGCCGAGAACTGTGCTT 183 291 844 Antisense
GCAGACCCGACGAAATCTCTTTTGC 344 313 883 Antisense
TTTTGCACGCTACACTATGCCAGCA 463 673 902 Antisense
Sequence Source Affymetrix Proprietary Database