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[187075_at]

Description R11G11.10 /REP_DB=WormBase Gene ID /WP=CE12758 /TR=O16952 /GB=AAC69084.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 10      6grp_cgc > 53      6grp_cgc_sub > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 4.7
(-3)
A 		10.2
(-2.7)
A 		4.2
(-3)
A 		113.5
(3)
P 		109
B 7.3
(-3)
A 		39.3
(2.8)
A 		11.9
(-2.2)
A 		40.5
(3)
A 		33
C 21.5
(-3)
A 		22.7
(-2.9)
A 		24.4
(-2.7)
A 		75.9
(3)
P 		54
avr 11.2
(-3) 		24.1
(-1.8) 		13.5
(-2.8) 		76.6
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 50
(3)
A 		24
(-1.9)
A 		30.2
(-0.8)
A 		24
(-1.9)
A 		18.4
(-3)
A 		37.6
(0.6)
A 		32
B 2.1
(-3)
A 		39.4
(3)
A 		2.7
(-2.9)
A 		27.6
(1.1)
A 		19.6
(-0.2)
A 		22.2
(0.2)
A 		37
C 14.3
(-1.5)
A 		43.3
(3)
A 		13.1
(-1.7)
A 		20.3
(-0.6)
A 		30.9
(1.1)
A 		5
(-3)
A 		38
avr 22.1
(-1) 		35.6
(3) 		15.3
(-3) 		24
(-0.4) 		23
(-0.7) 		21.6
(-1.1) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 1.7
(-2.8)
A 		2.2
(-2.6)
A 		1.1
(-3)
A 		16.6
(3)
P 		16
B 2.3
(-3)
A 		9.7
(3)
A 		2.8
(-2.6)
A 		8.6
(2.1)
A 		7
C 7.1
(-2.4)
A 		6.5
(-3)
A 		8.5
(-1.1)
A 		12.8
(3)
P 		6
avr 3.7
(-3) 		6.1
(-1.4) 		4.1
(-2.7) 		12.7
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 9.2
(3)
A 		8.6
(2)
A 		6.6
(-1.3)
A 		6.1
(-2.2)
A 		5.6
(-3)
A 		9.2
(3)
A 		4
B 0.7
(-3)
A 		13.1
(3)
A 		0.7
(-3)
A 		7.3
(0.2)
A 		8
(0.5)
A 		8.3
(0.7)
A 		12
C 5.3
(-1.1)
A 		13.2
(3)
A 		3.3
(-2.2)
A 		4.1
(-1.7)
A 		10
(1.3)
A 		1.7
(-3)
A 		12
avr 5.1
(-1.8) 		11.6
(3) 		3.5
(-3) 		5.8
(-1.3) 		7.9
(0.3) 		6.4
(-0.9) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187075_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15519
Sequence Type Exemplar sequence
Representative Public ID R11G11.10 NCBI
Target Description R11G11.10 /REP_DB=WormBase Gene ID /WP=CE12758 /TR=O16952 /GB=AAC69084.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000021496 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:513219:516418:-1 11/11 None
R11G11.10 ENSEMBL cdna:pseudogene chromosome:CEL140:V:513219:515055:-1 gene:R11G11.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:513218-514907(-) 100.0 100.0
Public Domain and Genome References
Ensembl R11G11.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast D88930 protein R11G11.10 [imported] - Caenorhabditis elegans 5.0E-94
blast E88930 protein R11G11.11 [imported] - Caenorhabditis elegans 6.0E-89
blast NP_503232 Serpentine Receptor, class W family member (srw-107) [Caenorhabditis elegans] gb|AAC69087.2| Serpentine receptor, class w protein 107 [Caenorhabditis elegans] 2.0E-55
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000021496 5 155-177,215-237,286-305,340-362,377-399
Sequence
Target Sequence 
>C. ELEGANS:187075_AT
ggatgagcatacacgcctaattttgcaagacaattgtggcgagcatcaagacgtcagaaa
tctaccaagattcaagttagatattcgtcaattttcagaaaattatgaaatgttgattat
tcaattatacattgtttcagatgtgattgtttctcaatttctcccaagtgcagccttccc
tatcctaacggcgcttcttcttcgagaacttcgaaaactcaataaatccaggtcaaagct
tcaaagaaacggggtcgttgaagatcatgaagaaaaatatgggcttccgacgaaactcat
aactttacttacaattttgtcactgctatcagatgctccactgggatgtattgtgatgat
aaaacttttcgttcaacagggaactgcagtaatacgatttctgacagatcttatgatcta
ctttaatattttctcaactgccgtgtcgattttccgtccaattatgtgttttctaatgtc
tagccgctaccggattactgcacgacaattgttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGAGCATACACGCCTAATTTTG 344 513 231 Antisense
TGTGGCGAGCATCAAGACGTCAGAA 323 555 265 Antisense
AAATCCAGGTCAAAGCTTCAAAGAA 28 117 454 Antisense
AATATGGGCTTCCGACGAAACTCAT 284 171 506 Antisense
GACGAAACTCATAACTTTACTTACA 4 381 519 Antisense
TTGTCACTGCTATCAGATGCTCCAC 409 705 547 Antisense
ATCAGATGCTCCACTGGGATGTATT 140 27 558 Antisense
TTTTCCGTCCAATTATGTGTTTTCT 292 677 680 Antisense
GTGTTTTCTAATGTCTAGCCGCTAC 701 485 696 Antisense
TCTAGCCGCTACCGGATTACTGCAC 329 615 709 Antisense
CGGATTACTGCACGACAATTGTTCA 667 243 721 Antisense
Sequence Source Affymetrix Proprietary Database