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[187074_at]

Description Y77E11A.7 /REP_DB=WormBase Gene ID /WP=CE25621 /TR=Q9N4B6 /GB=AAF36077.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 32      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 23.7
(-2)
A 		14.4
(-3)
A 		52.8
(1.1)
A 		70.9
(3)
A 		57
B 9
(-3)
A 		59.2
(3)
A 		17.8
(-1.9)
A 		13.3
(-2.5)
A 		50
C 53.6
(3)
A 		14.5
(-3)
A 		32
(-0.3)
A 		18.3
(-2.4)
A 		39
avr 28.8
(-3) 		29.4
(-2.3) 		34.2
(3) 		34.2
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 55
(3)
A 		38.2
(0.8)
A 		11.5
(-2.6)
A 		8.5
(-3)
A 		50.3
(2.4)
A 		41.8
(1.3)
A 		47
B 40.5
(2.3)
A 		37.6
(0.4)
A 		37
(-0)
A 		32.7
(-2.9)
A 		32.5
(-3)
A 		41.6
(3)
A 		9
C 14.8
(-3)
A 		51.3
(0.8)
A 		41.3
(-0.2)
A 		71.8
(3)
P 		41.7
(-0.2)
A 		16.4
(-2.8)
A 		57
avr 36.8
(0.3) 		42.4
(3) 		29.9
(-3) 		37.7
(0.7) 		41.5
(2.6) 		33.3
(-1.4) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 8.6
(0.1)
A 		3.1
(-3)
A 		13.8
(3)
A 		10.4
(1.1)
A 		11
B 2.9
(-2.9)
A 		14.6
(3)
A 		4.1
(-2.3)
A 		2.8
(-3)
A 		12
C 17.8
(3)
A 		4.2
(-2.6)
A 		11.2
(0.3)
A 		3.1
(-3)
A 		15
avr 9.8
(3) 		7.3
(-0.4) 		9.7
(2.9) 		5.4
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 10.1
(0.6)
A 		13.6
(2.3)
A 		2.5
(-2.9)
A 		2.2
(-3)
A 		15.2
(3)
A 		10.2
(0.7)
A 		13
B 14.1
(1.8)
A 		12.5
(0.4)
A 		9
(-2.7)
A 		8.7
(-3)
A 		13.2
(1)
A 		15.5
(3)
A 		7
C 5.5
(-3)
A 		15.7
(3)
A 		10.5
(-0.1)
A 		14.4
(2.2)
P 		13.5
(1.7)
A 		5.5
(-3)
A 		10
avr 9.9
(-0.7) 		13.9
(2.9) 		7.3
(-3) 		8.4
(-2) 		14
(3) 		10.4
(-0.2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187074_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10985
Sequence Type Exemplar sequence
Representative Public ID Y77E11A.7 NCBI
Target Description Y77E11A.7 /REP_DB=WormBase Gene ID /WP=CE25621 /TR=Q9N4B6 /GB=AAF36077.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171898(10), NM_001028414(10), NM_171267(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171898 NCBI Caenorhabditis elegans Y77E11A.7a (Y77E11A.7) mRNA, complete cds. 10/11 None
NM_001028414 NCBI Caenorhabditis elegans Y77E11A.7c (Y77E11A.7) mRNA, complete cds. 10/11 None
NM_171267 NCBI Caenorhabditis elegans Y77E11A.7b (Y77E11A.7) mRNA, complete cds. 10/11 None
SNAP00000027303 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1411095:1422204:-1 10/11 None
GENEFINDER00000027330 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1411095:1419844:-1 10/11 None
Y77E11A.7b ENSEMBL cdna:known chromosome:CEL140:IV:1410785:1419846:-1 gene:Y77E11A.7 10/11 None
Y77E11A.7a ENSEMBL cdna:known chromosome:CEL140:IV:1410818:1419845:-1 gene:Y77E11A.7 10/11 None
Y77E11A.7c ENSEMBL cdna:known chromosome:CEL140:IV:1411095:1419844:-1 gene:Y77E11A.7 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1411100-1419850(-) 95.85 100.0
Public Domain and Genome References
Ensembl Y77E11A.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36077 Hypothetical protein Y77E11A.7a [Caenorhabditis elegans] ref|NP_741317.2| Y77E11A.7a [Caenorhabditis elegans] 0.0
blast AAM97985 Hypothetical protein Y77E11A.7b [Caenorhabditis elegans] ref|NP_741316.2| Y77E11A.7b [Caenorhabditis elegans] 0.0
blast AAU05554 Hypothetical protein Y77E11A.7c [Caenorhabditis elegans] ref|NP_001023585.1| Y77E11A.7c [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187074_AT
gtcgcctaggaccaccgaaaaatcacgcggaaatgctaaccgaatggatgaataccctaa
tgggatcaacttccgaagactatgatattgtcattcataacgttgtgaattcgatgaaaa
agcagctcgacgagatgctcggcgagccgccccaacaccacactgaatatatggatgaag
ccggtggtccatcatcgactagttcgatgaaacgtatgaaaatgatgaattcgcatggag
cagcagaggatgatgaggatgatgatgatggggggcatcatcatgttgttggaaattctg
gaaaacccagatttgaagaacctagtgatgattatacttatttgaaagctctgagcaagc
tgaattcagatacagtacttaagatctacaaaatccaggtctcaaaacgaaaatttctcg
attttcgtggtgaacgctacattttcgacggcgaagagtacgtggaggaggaggtgatcg
ctgaggagctcactgaagtgccggcgagctcggcgaacggagagcaatcggacgatgtga
aatacaatgagagaggagcccaggcagccgcctttttcttccgtcaagctactgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGCCTAGGACCACCGAAAAATCA 527 473 1358 Antisense
GCAGCTCGACGAGATGCTCGGCGAG 366 313 1479 Antisense
GCCCCAACACCACACTGAATATATG 125 287 1506 Antisense
GATGAAGCCGGTGGTCCATCATCGA 43 411 1531 Antisense
TGGGGGGCATCATCATGTTGTTGGA 288 553 1626 Antisense
TGGTGAACGCTACATTTTCGACGGC 288 551 1785 Antisense
AGGAGGAGGTGATCGCTGAGGAGCT 323 57 1823 Antisense
TGAGGAGCTCACTGAAGTGCCGGCG 447 567 1839 Antisense
CGGCGAGCTCGGCGAACGGAGAGCA 7 243 1859 Antisense
CAATGAGAGAGGAGCCCAGGCAGCC 120 183 1902 Antisense
CTTTTTCTTCCGTCAAGCTACTGAA 308 221 1929 Antisense
Sequence Source Affymetrix Proprietary Database