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[187073_at]

Description Y57A10A.23 /REP_DB=WormBase Gene ID /WP=CE22626 /TR=Q9NA78 /GB=CAB55026.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 71      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 25      6grp_total > 72      4grp_total > 57      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6212
1 2 3 4 range
A 1140.8
(-2)
P 		6004
(3)
P 		5662.8
(2.6)
P 		178.3
(-3)
P 		5826
B 1415.2
(-1.8)
P 		5089.5
(1.7)
P 		6389.9
(3)
P 		223.6
(-3)
P 		6166
C 1188.6
(-1.9)
P 		4889.3
(2)
P 		5799.3
(3)
P 		204.2
(-3)
P 		5595
avr 1248.2
(-1.9) 		5327.6
(2.3) 		5950.7
(3) 		202
(-3) 		5749

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5562
1 2 3 4 5 6 range
A 3446.9
(-0.5)
P 		3254.6
(-0.7)
P 		5773.6
(2.6)
P 		6092.2
(3)
P 		5180.8
(1.8)
P 		1495.4
(-3)
P 		4597
B 4084.2
(-0.7)
P 		4728.2
(0.1)
P 		7057.5
(3)
P 		6210.5
(2)
P 		6724.2
(2.6)
P 		2176.2
(-3)
P 		4881
C 3272.8
(-1.1)
P 		4541.6
(1)
P 		4482.5
(0.9)
P 		5710.2
(3)
P 		4458.4
(0.9)
P 		2182.7
(-3)
P 		3528
avr 3601.3
(-0.6) 		4174.8
(0.3) 		5771.2
(2.7) 		6004.3
(3) 		5454.5
(2.2) 		1951.4
(-3) 		4053
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1995
1 2 3 4 range
A 415.4
(-1.4)
P 		1303.3
(2.3)
P 		1480.4
(3)
P 		26.1
(-3)
P 		1454
B 451.3
(-1.3)
P 		1257
(2.1)
P 		1480.7
(3)
P 		47.6
(-3)
P 		1433
C 393.5
(-1.9)
P 		1405.7
(1.1)
P 		2021.2
(3)
P 		34.4
(-3)
P 		1987
avr 420.1
(-1.6) 		1322
(1.7) 		1660.8
(3) 		36
(-3) 		1625

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2368
1 2 3 4 5 6 range
A 635.4
(-1.6)
P 		1157.5
(1)
P 		1257.4
(1.5)
P 		1545.1
(2.9)
P 		1563.3
(3)
P 		364.1
(-3)
P 		1199
B 1421.1
(-1.1)
P 		1573.8
(-0.6)
P 		1713.8
(-0.2)
P 		1645
(-0.4)
P 		2731.9
(3)
P 		811.5
(-3)
P 		1920
C 1213.1
(1.1)
P 		1385.8
(2.5)
P 		1140.9
(0.5)
P 		1148.3
(0.5)
P 		1442.7
(3)
P 		730.7
(-3)
P 		712
avr 1089.9
(-0.9) 		1372.4
(0.5) 		1370.7
(0.5) 		1446.1
(0.8) 		1912.6
(3) 		635.4
(-3) 		1277
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187073_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4019
Sequence Type Exemplar sequence
Representative Public ID Y57A10A.23 NCBI
Target Description Y57A10A.23 /REP_DB=WormBase Gene ID /WP=CE22626 /TR=Q9NA78 /GB=CAB55026.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064198(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064198 NCBI Caenorhabditis elegans Y57A10A.23 (Y57A10A.23) mRNA, complete cds. 11/11 None
SNAP00000026028 ENSEMBL cdna:SNAP chromosome:CEL140:II:12239846:12248323:1 11/11 None
GENEFINDER00000026041 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12240290:12241874:1 11/11 None
Y57A10A.23.1 ENSEMBL cdna:known chromosome:CEL140:II:12240288:12241939:1 gene:Y57A10A.23 11/11 None
Y57A10A.23.2 ENSEMBL cdna:known chromosome:CEL140:II:12240290:12241939:1 gene:Y57A10A.23 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12240286-12241871(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57A10A.23
Entrez Gene 174863 Entrez gene
SwissProt Q9NA78 EMBL-EBI
WormBase CE22626 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1586086_X_AT similar to Thioredoxin domain containing protein 12 precursor (Thioredoxin-like protein p19) (Endoplasmic reticulum protein ERp19) (hTLP19) cfa
CANINE_2:CFA.12092.1.A1_AT similar to Thioredoxin domain containing protein 12 precursor (Thioredoxin-like protein p19) (Endoplasmic reticulum protein ERp19) (hTLP19) cfa
CANINE_2:CFA.16443.1.A1_S_AT similar to Thioredoxin domain containing protein 12 precursor (Thioredoxin-like protein p19) (Endoplasmic reticulum protein ERp19) (hTLP19) cfa
CANINE_2:CFAAFFX.6611.1.S1_S_AT similar to Thioredoxin domain containing protein 12 precursor (Thioredoxin-like protein p19) (Endoplasmic reticulum protein ERp19) (hTLP19) cfa
HG-U133_PLUS_2:223017_AT thioredoxin domain containing 12 (endoplasmic reticulum) hs
HG-U133B:223017_AT thioredoxin domain containing 12 (endoplasmic reticulum) hs
HU35KSUBD:RC_Z41803_AT thioredoxin domain containing 12 (endoplasmic reticulum) hs
U133_X3P:G4406576_3P_AT thioredoxin domain containing 12 (endoplasmic reticulum) hs
HG-U95C:65799_AT thioredoxin domain containing 12 (endoplasmic reticulum) hs
MG-U74AV2:97492_AT thioredoxin domain containing 12 (endoplasmic reticulum) mm
MOE430A:1415738_AT thioredoxin domain containing 12 (endoplasmic reticulum) mm
MOE430B:1415738_AT thioredoxin domain containing 12 (endoplasmic reticulum) mm
MOUSE430A_2:1415738_AT thioredoxin domain containing 12 (endoplasmic reticulum) mm
MOUSE430_2:1415738_AT thioredoxin domain containing 12 (endoplasmic reticulum) mm
MU19KSUBB:TC28692_AT Thioredoxin domain containing 12 (endoplasmic reticulum), mRNA (cDNA clone MGC:6460 IMAGE:2615934) mm
MU19KSUBB:TC28692_G_AT Thioredoxin domain containing 12 (endoplasmic reticulum), mRNA (cDNA clone MGC:6460 IMAGE:2615934) mm
MU19KSUBB:TC33152_AT Thioredoxin domain containing 12 (endoplasmic reticulum), mRNA (cDNA clone MGC:6460 IMAGE:2615934) mm
RG-U34B:RC_AA925478_AT similar to RIKEN cDNA 0610040B21 (predicted) rn
RAE230A:1388523_AT similar to RIKEN cDNA 0610040B21 (predicted) rn
RAT230_2:1388523_AT similar to RIKEN cDNA 0610040B21 (predicted) rn
RG-U34A:RC_AA800739_AT Similar to RIKEN cDNA 0610040B21 (predicted) rn
RAE230A:1371565_AT Similar to RIKEN cDNA 0610040B21 (predicted) rn
RAT230_2:1371565_AT Similar to RIKEN cDNA 0610040B21 (predicted) rn
RAE230B:1379023_AT Similar to RIKEN cDNA 0610040B21 (predicted) rn
RAT230_2:1379023_AT Similar to RIKEN cDNA 0610040B21 (predicted) rn
RG-U34B:RC_AI028958_AT Similar to RIKEN cDNA 0610040B21 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB60767 Hypothetical protein Y57A10A.24 [Caenorhabditis elegans] ref|NP_496600.1| Y57A10A.24 [Caenorhabditis elegans] 0.0
blast CAE73474 Hypothetical protein CBG20925 [Caenorhabditis briggsae] 1.0E-158
blast CAB55026 Hypothetical protein Y57A10A.23 [Caenorhabditis elegans] ref|NP_496599.1| Y57A10A.23 [Caenorhabditis elegans] 5.0E-78
blast CAB55026 Hypothetical protein Y57A10A.23 [Caenorhabditis elegans] ref|NP_496599.1| Y57A10A.23 [Caenorhabditis elegans] 4.0E-77
blast CAE73473 Hypothetical protein CBG20924 [Caenorhabditis briggsae] 4.0E-76
Sequence
Target Sequence 
>C. ELEGANS:187073_AT
ttctcctcttggcacttgtgagtgcgtcggcgtacgcgagtttcgacaagatcaaggatt
ctattcaaaacccattggcacgtggatttggtgacgatattgcgtgggtcaagtgggaag
atgcaattgagactgctttggatactgataagccaatcttcttgttgatccacaagtctt
ggtgccatgcttgcaaagctctcaagaagaccttccaacaatccaacgccaagaaagcct
tcaaaaagctctcagagcactttgtaatggttaacaccgaagacgacgacgagccattcg
aggaggagtaccgtccagacggaaagtacattccacgtctgcttttcctcgacaaaaatg
gagatcttcttcaagaattcaaaaataagaaggccgaatacaaaaattacgcgtattact
actcatcaccagctgatatccttaactctatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCCTCTTGGCACTTGTGAGTGC 535 691 23 Antisense
TGCGTCGGCGTACGCGAGTTTCGAC 518 575 45 Antisense
GATAAGCCAATCTTCTTGTTGATCC 222 423 169 Antisense
GTCTTGGTGCCATGCTTGCAAAGCT 114 469 198 Antisense
GCAAAGCTCTCAAGAAGACCTTCCA 193 319 215 Antisense
AGACGACGACGAGCCATTCGAGGAG 709 67 303 Antisense
TCGAGGAGGAGTACCGTCCAGACGG 388 601 320 Antisense
GGAAAGTACATTCCACGTCTGCTTT 456 527 343 Antisense
CGTCTGCTTTTCCTCGACAAAAATG 357 245 358 Antisense
TACGCGTATTACTACTCATCACCAG 35 649 430 Antisense
CCAGCTGATATCCTTAACTCTATGA 269 273 451 Antisense
Sequence Source Affymetrix Proprietary Database