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[187072_at]

Description Y113G7B.21 /REP_DB=WormBase Gene ID /WP=CE24143 /TR=Q9U2W7 /GB=CAB54339.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 29      6grp_cgc > 39      6grp_cgc_sub > Cu      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 126.2
(1.5)
P 		139
(3)
A 		86.5
(-3)
A 		134.8
(2.5)
A 		53
B 113.3
(3)
P 		88.4
(1.3)
A 		24.8
(-3)
A 		83.2
(1)
A 		89
C 114.9
(-0)
P 		103.9
(-0.8)
A 		71.9
(-3)
A 		158.8
(3)
M 		87
avr 118.1
(2.3) 		110.4
(1.6) 		61.1
(-3) 		125.6
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 90.4
(-0.4)
A 		57.5
(-3)
A 		73.1
(-1.8)
A 		74.8
(-1.7)
A 		77.4
(-1.5)
A 		134.7
(3)
P 		77
B 68.5
(-1.6)
A 		50.2
(-3)
A 		95.2
(0.5)
A 		84.4
(-0.3)
A 		75.1
(-1.1)
A 		127.6
(3)
A 		77
C 48.1
(-0.5)
A 		60.8
(0.4)
A 		11
(-3)
A 		62.7
(0.5)
A 		67.8
(0.8)
A 		99.6
(3)
A 		89
avr 69
(-1.8) 		56.2
(-3) 		59.8
(-2.7) 		74
(-1.3) 		73.4
(-1.4) 		120.6
(3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 46
(3)
P 		30.2
(-0.6)
A 		22.6
(-2.3)
A 		19.7
(-3)
A 		26
B 36.1
(3)
P 		21.8
(0.2)
A 		5.7
(-3)
A 		17.7
(-0.6)
A 		30
C 38
(3)
P 		29.9
(-0.7)
A 		25
(-3)
A 		26.8
(-2.2)
M 		13
avr 40
(3) 		27.3
(-0.4) 		17.8
(-3) 		21.4
(-2) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 16.7
(-2.7)
A 		20.4
(-1.4)
A 		15.9
(-3)
A 		19
(-1.9)
A 		23.4
(-0.3)
A 		32.8
(3)
P 		17
B 23.8
(-1.6)
A 		16.7
(-3)
A 		23.1
(-1.8)
A 		22.4
(-1.9)
A 		30.5
(-0.3)
A 		47.6
(3)
A 		31
C 17.8
(-0)
A 		18.5
(0.1)
A 		2.8
(-3)
A 		12.6
(-1.1)
A 		21.9
(0.8)
A 		33.3
(3)
A 		31
avr 19.4
(-1.6) 		18.5
(-1.9) 		13.9
(-3) 		18
(-2) 		25.3
(-0.2) 		37.9
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187072_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13791
Sequence Type Exemplar sequence
Representative Public ID Y113G7B.21 NCBI
Target Description Y113G7B.21 /REP_DB=WormBase Gene ID /WP=CE24143 /TR=Q9U2W7 /GB=CAB54339.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075506(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075506 NCBI Caenorhabditis elegans Y113G7B.21 (Y113G7B.21) mRNA, complete cds. 11/11 None
SNAP00000024716 ENSEMBL cdna:SNAP chromosome:CEL140:V:20233271:20256921:-1 10/11 None
GENEFINDER00000024722 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20237856:20265280:-1 10/11 None
Y113G7B.21 ENSEMBL cdna:known chromosome:CEL140:V:20252866:20260785:-1 gene:Y113G7B.21 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20252865-20255505(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y113G7B.21
Entrez Gene 3565067 Entrez gene
SwissProt Q9U2W7 EMBL-EBI
WormBase CE24143 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54337 Hypothetical protein Y113G7B.23 [Caenorhabditis elegans] ref|NP_507906.1| Phasmid Socket Absent family member (psa-1) [Caenorhabditis elegans] gb|AAG16654.1| SWI3-like protein; PSA-1 [Caenorhabditis elegans] 0.0
blast CAE67424 Hypothetical protein CBG12912 [Caenorhabditis briggsae] 0.0
blast XP_393008 PREDICTED: similar to ENSANGP00000027316 [Apis mellifera] 1.0E-139
blast CAB54337 Hypothetical protein Y113G7B.23 [Caenorhabditis elegans] ref|NP_507906.1| Phasmid Socket Absent family member (psa-1) [Caenorhabditis elegans] gb|AAG16654.1| SWI3-like protein; PSA-1 [Caenorhabditis elegans] 1.0E-138
blast CAB76740 Hypothetical protein Y113G7B.18 [Caenorhabditis elegans] ref|NP_507908.1| MeDiaTor family member (mdt-17) [Caenorhabditis elegans] 1.0E-130
blast CAE67424 Hypothetical protein CBG12912 [Caenorhabditis briggsae] 1.0E-117
blast CAB54339 Hypothetical protein Y113G7B.21 [Caenorhabditis elegans] ref|NP_507907.1| Y113G7B.21 [Caenorhabditis elegans] 4.0E-94
blast CAE67423 Hypothetical protein CBG12911 [Caenorhabditis briggsae] 2.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 1.9E-10
Pfam IPR007526 EMBL-EBI SWIRM 2.9E-42
Pfam IPR008591 EMBL-EBI Eukaryotic protein of unknown function DUF873 3.8E-74
Pfam IPR008591 EMBL-EBI Eukaryotic protein of unknown function DUF873 2.5E-33
Pfam IPR001888 EMBL-EBI Transposase, type 1 3.8E-8
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 1.6E-4
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 0.33
Pfam IPR007526 EMBL-EBI SWIRM 2.9E-42
Sequence
Target Sequence 
>C. ELEGANS:187072_AT
cattcgaccacaatttttctgctcaatgccagttactcatttgccagaagccctggattt
gaggggttgtggtggatttaataccgctcagatcgaagagcgcgccgtgcgatcgcgttc
aattctacaacgaatgctcgatgtggcttctcaccgggctctcgtaacaatggtttccga
cgtggcggaacgtgtaagccgtatcagtcttgatccaactgtacagtatagatggttgaa
ttgtggtcgaactacgtcacggatgatgtttaatatgacttctaaggattttgaaatgta
tattggaactgtacgaagcgtctttttcgcgaatatatcgtcggatggtgttgaagttga
gacgaaagacggtataaaaatgaagtgtcaacgggatccggcaagagttatgtacgcttg
tcagtacgctgtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTCGACCACAATTTTTCTGCTCA 341 217 42 Antisense
GCTCAATGCCAGTTACTCATTTGCC 145 303 62 Antisense
AGATCGAAGAGCGCGCCGTGCGATC 593 65 131 Antisense
GCGATCGCGTTCAATTCTACAACGA 574 289 150 Antisense
AACGAATGCTCGATGTGGCTTCTCA 295 145 170 Antisense
TCACCGGGCTCTCGTAACAATGGTT 234 625 192 Antisense
GTAACAATGGTTTCCGACGTGGCGG 662 461 205 Antisense
AAGCCGTATCAGTCTTGATCCAACT 554 149 237 Antisense
GTGGTCGAACTACGTCACGGATGAT 570 489 284 Antisense
GTACGAAGCGTCTTTTTCGCGAATA 242 459 352 Antisense
ATGTACGCTTGTCAGTACGCTGTAA 627 47 451 Antisense
Sequence Source Affymetrix Proprietary Database