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[187070_at]

Description Y105C5A.22 /REP_DB=WormBase Gene ID /WP=CE23201 /TR=Q9NF65 /GB=CAB55000.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 65.7
(-2)
A 		52.4
(-3)
A 		65.7
(-2)
A 		133.4
(3)
M 		81
B 60.1
(-1.4)
P 		58.3
(-3)
A 		59.6
(-1.9)
A 		65.1
(3)
A 		7
C 66.8
(-1.6)
A 		112.3
(2.5)
A 		51.9
(-3)
A 		117.9
(3)
P 		66
avr 64.2
(-2.3) 		74.3
(-1) 		59.1
(-3) 		105.5
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 65.4
(3)
A 		10.6
(-2.7)
A 		57.1
(2.1)
A 		7.4
(-3)
A 		53.7
(1.8)
A 		47.6
(1.2)
A 		58
B 53.6
(1.1)
A 		30.2
(-3)
A 		38.1
(-1.6)
A 		64.2
(3)
A 		41.4
(-1)
A 		32.1
(-2.7)
A 		34
C 61.8
(2)
A 		56.7
(1.4)
A 		45.1
(-0.2)
A 		69
(3)
A 		46.5
(0)
A 		24
(-3)
A 		45
avr 60.3
(3) 		32.5
(-3) 		46.8
(0.1) 		46.9
(0.1) 		47.2
(0.2) 		34.6
(-2.5) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 23.9
(3)
A 		11.4
(-3)
A 		17.2
(-0.2)
A 		19.5
(0.9)
M 		13
B 19.2
(3)
P 		14.4
(-2.3)
A 		13.8
(-3)
A 		13.9
(-2.9)
A 		5
C 22.1
(-1.3)
A 		32.3
(3)
A 		18.1
(-3)
A 		19.9
(-2.2)
P 		14
avr 21.7
(3) 		19.4
(0.4) 		16.4
(-3) 		17.8
(-1.4) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 12.1
(1.3)
A 		3.8
(-2.2)
A 		12.4
(1.4)
A 		1.9
(-3)
A 		16.2
(3)
A 		11.6
(1.1)
A 		14
B 18.7
(3)
A 		10.1
(-2.4)
A 		9.2
(-3)
A 		17
(1.9)
A 		16.8
(1.8)
A 		12
(-1.2)
A 		10
C 22.9
(3)
A 		17.3
(0.7)
A 		11.5
(-1.6)
A 		13.9
(-0.6)
A 		15
(-0.2)
A 		8
(-3)
A 		15
avr 17.9
(3) 		10.4
(-3) 		11
(-2.5) 		10.9
(-2.6) 		16
(1.5) 		10.5
(-2.9) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187070_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10319
Sequence Type Exemplar sequence
Representative Public ID Y105C5A.22 NCBI
Target Description Y105C5A.22 /REP_DB=WormBase Gene ID /WP=CE23201 /TR=Q9NF65 /GB=CAB55000.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070485(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070485 NCBI Caenorhabditis elegans Y105C5A.22 (Y105C5A.22) mRNA, complete cds. 11/11 None
GENEFINDER00000033785 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15798083:15799715:-1 11/11 None
Y105C5A.22 ENSEMBL cdna:known chromosome:CEL140:IV:15798083:15799715:-1 gene:Y105C5A.22 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033717 6/11 Cross Hyb Matching Probes None
SNAP00000039831 1/11 Cross Hyb Matching Probes None
SNAP00000016201 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17607494-17609130(+) 98.29 98.29
chrII:13618480-13620086(-) 93.52 93.52
chrIV:15798088-15799721(-) 100.0 100.0
chrIV:14451511-14453115(-) 91.05 91.05
Public Domain and Genome References
Gene Title
Ensembl Y105C5A.22
Entrez Gene 190881 Entrez gene
SwissProt Q9NF65 EMBL-EBI
WormBase CE23201 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55000 Hypothetical protein Y105C5A.22 [Caenorhabditis elegans] ref|NP_502886.1| Y105C5A.22 [Caenorhabditis elegans] 3.0E-68
Sequence
Target Sequence 
>C. ELEGANS:187070_AT
gttacaggcagagggacccgtcctccctgagtttaaagtcacacagatgagtgtaatcgg
atatttctacgcaagacttatgttttcatctatagagaccacagaaacatcgacgttctt
cgagatttcgagtttcgcacgacttcttttccggcgccggatgccgcaaggaaacacgaa
ttatcaaatgcagataataataattggactagcgcccattcttcagatttcatatttgca
tcgctcagccgtcggacatcgtgacacatttgggaaggcggctccgaatttcgggtccag
gatcgtcagccttcgtctatgcagtgctgtattcggtcggagaaaggagagaagaaagaa
gatgagaaaaatagggaggaatttttcccacgacagacagcagtcttcgacgtcactctc
cgctcagccaccagtgtatcgacgacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTACAGGCAGAGGGACCCGTCCTC 540 445 30 Antisense
GTCCTCCCTGAGTTTAAAGTCACAC 589 473 49 Antisense
GATTTCGAGTTTCGCACGACTTCTT 93 429 153 Antisense
TAATTGGACTAGCGCCCATTCTTCA 336 631 230 Antisense
ATTTCATATTTGCATCGCTCAGCCG 498 15 256 Antisense
GCGGCTCCGAATTTCGGGTCCAGGA 580 289 307 Antisense
GTCAGCCTTCGTCTATGCAGTGCTG 413 465 334 Antisense
ATGCAGTGCTGTATTCGGTCGGAGA 255 43 348 Antisense
GGAATTTTTCCCACGACAGACAGCA 559 533 407 Antisense
GACAGACAGCAGTCTTCGACGTCAC 7 369 421 Antisense
CTCAGCCACCAGTGTATCGACGACG 388 227 452 Antisense
Sequence Source Affymetrix Proprietary Database