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[187069_at]

Description Y57A10A.26 /REP_DB=WormBase Gene ID /WP=CE22631 /TR=Q9NA74 /GB=CAB55031.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 17      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 10      6grp_total > 17      4grp_total > 53      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1928
1 2 3 4 range
A 2290.9
(3)
P 		2212.8
(2.7)
P 		1322.9
(-1)
P 		856
(-3)
P 		1435
B 2574.4
(3)
P 		1715.9
(0.2)
P 		1274.1
(-1.2)
P 		737.8
(-3)
P 		1837
C 2205.4
(3)
P 		1681.7
(1)
P 		1167.5
(-1)
P 		646.1
(-3)
P 		1559
avr 2356.9
(3) 		1870.1
(1.2) 		1254.8
(-1.1) 		746.6
(-3) 		1610

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2464
1 2 3 4 5 6 range
A 3010
(3)
P 		1535.8
(-0.6)
P 		817.6
(-2.4)
P 		567.5
(-3)
P 		699.1
(-2.7)
P 		632.3
(-2.8)
P 		2443
B 2394.8
(3)
P 		1370.2
(-0.5)
P 		929.6
(-2)
P 		629.5
(-3)
P 		836.7
(-2.3)
P 		755.4
(-2.6)
P 		1765
C 2244.5
(3)
P 		1361.4
(-0.1)
P 		928.7
(-1.6)
P 		546.1
(-3)
P 		640.8
(-2.7)
P 		706.9
(-2.4)
P 		1698
avr 2549.8
(3) 		1422.5
(-0.4) 		892
(-2.1) 		581
(-3) 		725.5
(-2.6) 		698.2
(-2.6) 		1969
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 725
1 2 3 4 range
A 834.1
(3)
P 		480.3
(0)
P 		345.8
(-1.1)
P 		125.3
(-3)
P 		709
B 821
(3)
P 		423.8
(-0.6)
P 		295.2
(-1.8)
P 		157.2
(-3)
P 		664
C 730
(3)
P 		483.5
(0.6)
P 		406.9
(-0.1)
P 		108.9
(-3)
P 		621
avr 795
(3) 		462.5
(-0) 		349.3
(-1) 		130.5
(-3) 		665

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 724
1 2 3 4 5 6 range
A 554.9
(3)
P 		546.2
(2.9)
P 		178.1
(-2.5)
P 		143.9
(-3)
P 		211
(-2)
P 		153.9
(-2.9)
P 		411
B 833.3
(3)
P 		456.1
(-0.4)
P 		225.7
(-2.5)
P 		166.7
(-3)
P 		340
(-1.4)
P 		281.7
(-2)
P 		667
C 831.9
(3)
P 		415.4
(-0.5)
P 		236.4
(-1.9)
P 		109.8
(-3)
P 		207.3
(-2.2)
P 		236.6
(-1.9)
P 		722
avr 740
(3) 		472.6
(0.3) 		213.4
(-2.3) 		140.1
(-3) 		252.8
(-1.9) 		224.1
(-2.2) 		600
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187069_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3566
Sequence Type Exemplar sequence
Representative Public ID Y57A10A.26 NCBI
Target Description Y57A10A.26 /REP_DB=WormBase Gene ID /WP=CE22631 /TR=Q9NA74 /GB=CAB55031.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064203(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064203 NCBI Caenorhabditis elegans Y57A10A.26 (Y57A10A.26) mRNA, complete cds. 11/11 None
SNAP00000026032 ENSEMBL cdna:SNAP chromosome:CEL140:II:12263164:12265898:1 11/11 None
GENEFINDER00000026052 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12264100:12265898:1 11/11 None
Y57A10A.26.1 ENSEMBL cdna:known chromosome:CEL140:II:12264078:12265990:1 gene:Y57A10A.26 11/11 None
Y57A10A.26.2 ENSEMBL cdna:known chromosome:CEL140:II:12264094:12265898:1 gene:Y57A10A.26 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12264096-12265895(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57A10A.26
Entrez Gene 174868 Entrez gene
SwissProt Q9NA74 EMBL-EBI
WormBase CE22631 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1584983_AT similar to Y57A10A.26 cfa
CANINE_2:CFA.5940.1.A1_AT similar to Y57A10A.26 cfa
CANINE_2:CFAAFFX.794.1.S1_AT similar to Y57A10A.26 cfa
DROSGENOME1:154421_AT failed axon connections dm
DROSOPHILA_2:1624705_A_AT failed axon connections dm
CHICKEN:GGAAFFX.9863.1.S1_AT similar to hypothetical protein MGC2817 gga
U133_X3P:HS.159406.0.S1_3P_AT chromosome 6 open reading frame 168 hs
HG-U133_PLUS_2:232067_AT chromosome 6 open reading frame 168 hs
HG-U133B:232067_AT chromosome 6 open reading frame 168 hs
HG-U95B:59322_AT chromosome 6 open reading frame 168 hs
HU35KSUBA:RC_AA253412_AT Chromosome 6 open reading frame 168 hs
U133_X3P:HS.21489.0.A1_3P_AT Chromosome 6 open reading frame 168 hs
HG-U133_PLUS_2:230447_AT Chromosome 6 open reading frame 168 hs
HG-U133B:230447_AT Chromosome 6 open reading frame 168 hs
HG-U95C:63483_AT Chromosome 6 open reading frame 168 hs
HG-U95C:65309_AT Chromosome 6 open reading frame 168 hs
HU35KSUBB:RC_R41674_AT Chromosome 6 open reading frame 168 hs
HU35KSUBC:RC_H88334_AT Chromosome 6 open reading frame 168 hs
RAE230B:1380872_AT Similar to hypothetical protein MGC2817 rn
RAT230_2:1380872_AT Similar to hypothetical protein MGC2817 rn
Protein Similarities
Method ID Description E-Value
blast CAB55031 Hypothetical protein Y57A10A.26 [Caenorhabditis elegans] ref|NP_496604.1| Y57A10A.26 [Caenorhabditis elegans] 1.0E-156
blast CAE73480 Hypothetical protein CBG20932 [Caenorhabditis briggsae] 1.0E-133
Sequence
Target Sequence 
>C. ELEGANS:187069_AT
catcgagctgaacggtcgccagcacgctgacagcaccatcatcatcgacaatctgaccga
gcacttccacaagtcggatctcgaggatctctccgcttccgacaaggccatcgcgcgagc
attcttcgcacttctcgagcatcatctgtgctgggtgagcttgtactctcgcggtcagga
ctttggatggctagccactgacaccggattcggacgtttgttgaccggaatcaaggggtt
cgcattcaagaactttatcgtcaaaagcttcacgaaaaaggttcgcggacgtgctgccgc
tcaaggaatgggaactttctccagggaggaggtgttggatcaggcgaagaaggacttgga
cgccatttcgacacagttgggcgataagccgtatctcttcggaagcagcatcaagacgat
cgatgtgaccgcatttgctcatctcgccgagctcatctacacaccacaattcagcccgga
aatccgtgcctaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCGAGCTGAACGGTCGCCAGCAC 555 211 210 Antisense
TCGACAATCTGACCGAGCACTTCCA 301 601 254 Antisense
TACTCTCGCGGTCAGGACTTTGGAT 127 647 373 Antisense
AGCCACTGACACCGGATTCGGACGT 226 85 402 Antisense
AAAAAGGTTCGCGGACGTGCTGCCG 488 129 484 Antisense
GTGCTGCCGCTCAAGGAATGGGAAC 91 479 500 Antisense
GGACGCCATTTCGACACAGTTGGGC 36 523 567 Antisense
TAAGCCGTATCTCTTCGGAAGCAGC 647 637 594 Antisense
CGATGTGACCGCATTTGCTCATCTC 245 249 630 Antisense
GCTCATCTACACACCACAATTCAGC 286 301 660 Antisense
TTCAGCCCGGAAATCCGTGCCTACA 215 687 679 Antisense
Sequence Source Affymetrix Proprietary Database