[Home] | [Total List]

[187067_at]

Description Y53G8AR.6 /REP_DB=WormBase Gene ID /WP=CE25422 /TR=Q9N3G0 /GB=AAF59543.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 22      4grp_high_8_8 > 38      6grp_total > 34      4grp_total > 06      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 108.2
(0.6)
P 		55.5
(-2.3)
A 		41.6
(-3)
A 		153.1
(3)
P 		112
B 85.9
(-2.6)
M 		82.2
(-3)
A 		132.6
(3)
P 		92.5
(-1.8)
P 		50
C 125.4
(-1.5)
A 		135.5
(3)
P 		122
(-3)
P 		123.4
(-2.4)
M 		14
avr 106.5
(-0.1) 		91.1
(-3) 		98.7
(-1.6) 		123
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 110.9
(3)
P 		79.5
(0.4)
P 		110
(2.9)
P 		39.6
(-3)
A 		75.4
(0)
A 		59.4
(-1.3)
A 		71
B 116.7
(3)
P 		99.3
(1.5)
P 		113.9
(2.8)
P 		86.3
(0.4)
P 		45.4
(-3)
A 		65.8
(-1.3)
P 		71
C 96.6
(1.8)
P 		74.2
(0)
A 		73.9
(0)
A 		35.2
(-3)
A 		112
(3)
P 		78
(0.3)
A 		77
avr 108.1
(3) 		84.3
(0.4) 		99.3
(2) 		53.7
(-3) 		77.6
(-0.4) 		67.7
(-1.5) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 39.4
(3)
P 		12
(-2.8)
A 		10.9
(-3)
A 		22.4
(-0.6)
P 		29
B 27.4
(1.2)
M 		20.3
(-2.7)
A 		30.7
(3)
P 		19.7
(-3)
P 		11
C 41.5
(2.7)
A 		39
(2)
P 		42.5
(3)
P 		20.8
(-3)
M 		22
avr 36.1
(3) 		23.8
(-1.9) 		28
(-0.2) 		21
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 20.4
(0.4)
P 		28.3
(3)
P 		24
(1.6)
P 		10
(-3)
A 		22.7
(1.2)
A 		14.5
(-1.5)
A 		18
B 40.6
(3)
P 		33
(0.9)
P 		27.6
(-0.5)
P 		22.9
(-1.8)
P 		18.5
(-3)
A 		24.6
(-1.3)
P 		22
C 35.8
(2.9)
P 		22.6
(0.2)
A 		18.8
(-0.6)
A 		7.1
(-3)
A 		36.3
(3)
P 		26.1
(0.9)
A 		29
avr 32.3
(3) 		28
(1.6) 		23.5
(0.2) 		13.3
(-3) 		25.8
(0.9) 		21.7
(-0.3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187067_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7514
Sequence Type Exemplar sequence
Representative Public ID Y53G8AR.6 NCBI
Target Description Y53G8AR.6 /REP_DB=WormBase Gene ID /WP=CE25422 /TR=Q9N3G0 /GB=AAF59543.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065286(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065286 NCBI Caenorhabditis elegans Y53G8AR.6 (Y53G8AR.6) mRNA, complete cds. 11/11 None
SNAP00000011800 ENSEMBL cdna:SNAP chromosome:CEL140:III:3283931:3301949:1 10/11 None
GENEFINDER00000011807 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3294741:3296579:1 11/11 None
Y53G8AR.6 ENSEMBL cdna:known chromosome:CEL140:III:3294741:3297155:1 gene:Y53G8AR.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041563 2/11 Cross Hyb Matching Probes None
GENEFINDER00000041573 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3294740-3296579(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y53G8AR.6
Entrez Gene 175432 Entrez gene
SwissProt Q9N3G0 EMBL-EBI
WormBase CE25422 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF59542 Hypothetical protein Y53G8AR.7a [Caenorhabditis elegans] ref|NP_001022903.1| Y53G8AR.7a [Caenorhabditis elegans] 1.0E-157
blast CAE69479 Hypothetical protein CBG15681 [Caenorhabditis briggsae] 1.0E-143
blast AAF59544 Hypothetical protein Y53G8AR.5 [Caenorhabditis elegans] ref|NP_497688.2| Y53G8AR.5 [Caenorhabditis elegans] 1.0E-121
blast AAF59543 Hypothetical protein Y53G8AR.6 [Caenorhabditis elegans] ref|NP_497687.1| Y53G8AR.6 [Caenorhabditis elegans] 1.0E-101
blast AAF59543 Hypothetical protein Y53G8AR.6 [Caenorhabditis elegans] ref|NP_497687.1| Y53G8AR.6 [Caenorhabditis elegans] 1.0E-96
blast CAE69481 Hypothetical protein CBG15683 [Caenorhabditis briggsae] 8.0E-27
blast CAE69481 Hypothetical protein CBG15683 [Caenorhabditis briggsae] 4.0E-23
blast NP_001016484 hypothetical protein LOC549238 [Xenopus tropicalis] 2.0E-11
Protein Domains
Database ID Description E-Value
scop a.140.2.SAP domain All alpha proteins; LEM/SAP HeH motif; SAP domain; SAP domain 1.29999995231628
scop a.140.2.SAP domain All alpha proteins; LEM/SAP HeH motif; SAP domain; SAP domain 0.990000009536743
scop a.140.2.SAP domain All alpha proteins; LEM/SAP HeH motif; SAP domain; SAP domain 0.430000007152557
Pfam IPR003034 EMBL-EBI DNA-binding SAP 5.6E-13
Pfam IPR003034 EMBL-EBI DNA-binding SAP 5.6E-13
Pfam IPR006575 EMBL-EBI RWD 9.0E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000011800 7 5-27,32-54,75-97,134-153,166-188,225-247,267-289
Sequence
Target Sequence 
>C. ELEGANS:187067_AT
gagcttctgggcgacgctggaatcacatctgacactcatttattatcagatgatattcta
aatgatgatattctcgatgctccgagtgttggagacgaatctgaagctgataagcttctg
ggatcagttgacggagcagaagagcacaaaacagataaatccgagggagaagagaagcat
gaagttcatttaattgataagaaaatcgatgaagttactgcagaaactgataaaagagcc
cgtgccatacgatttgggctccccgtcactgctgaagacctcggctcggatggagctaag
gctgccagggctaagagatttgatctcccagaagactcaaaacgactaacatcaaatgac
gcgaaggcttcacgtgctgaaagattcggaattaccccaaaaacgcctgccgctgatgat
aagctggccgcccgtgccgcccgttttggaattccagttggtggagcagcttcagcttca
gcttcgaaaaatgctccaaattctgagggaaaagctgcaaaattggctgctcgagccaaa
cgattcggtggtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTTCTGGGCGACGCTGGAATCA 293 389 154 Antisense
GCTGGAATCACATCTGACACTCATT 210 295 169 Antisense
AAAGAGCCCGTGCCATACGATTTGG 669 121 386 Antisense
GAAGACCTCGGCTCGGATGGAGCTA 634 337 427 Antisense
GATGGAGCTAAGGCTGCCAGGGCTA 428 407 442 Antisense
GAGATTTGATCTCCCAGAAGACTCA 394 397 468 Antisense
ATGACGCGAAGGCTTCACGTGCTGA 203 45 509 Antisense
CAAAAACGCCTGCCGCTGATGATAA 71 191 551 Antisense
GCCGCTGATGATAAGCTGGCCGCCC 505 285 562 Antisense
AGTTGGTGGAGCAGCTTCAGCTTCA 668 63 609 Antisense
GCTCGAGCCAAACGATTCGGTGGTG 662 297 682 Antisense
Sequence Source Affymetrix Proprietary Database