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[187066_at]

Description Y55B1AR.4 /REP_DB=WormBase Gene ID /WP=CE22490 /TR=Q9N382 /GB=AAF60784.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 08      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 30.5
(-3)
A 		39.5
(-0.3)
A 		50.3
(3)
A 		30.6
(-3)
A 		20
B 8
(-3)
A 		20.4
(-1.8)
A 		63.2
(2.5)
A 		68.7
(3)
A 		61
C 50.7
(-1.5)
A 		40.3
(-2.1)
A 		25.9
(-3)
A 		122
(3)
A 		96
avr 29.7
(-3) 		33.4
(-2.5) 		46.5
(-0.7) 		73.8
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 13.1
(-2.5)
A 		6.9
(-2.8)
A 		33
(-1.5)
A 		42.1
(-1.1)
A 		3.6
(-3)
A 		122.8
(3)
P 		119
B 3.4
(-3)
A 		27.8
(-1.5)
A 		23.4
(-1.8)
A 		13.3
(-2.4)
A 		82.9
(1.8)
P 		102.8
(3)
P 		99
C 18.5
(-3)
A 		66.4
(-0.3)
A 		27.7
(-2.5)
A 		37.5
(-1.9)
A 		63.4
(-0.5)
A 		126.1
(3)
P 		108
avr 11.7
(-3) 		33.7
(-1.7) 		28
(-2.1) 		31
(-1.9) 		50
(-0.8) 		117.2
(3) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 11.1
(1.6)
A 		8.6
(-0.1)
A 		13.1
(3)
A 		4.5
(-3)
A 		9
B 2.5
(-3)
A 		5
(-1.8)
A 		14.6
(3)
A 		14.7
(3)
A 		12
C 16.8
(1)
A 		11.6
(-1.7)
A 		9
(-3)
A 		20.6
(3)
A 		12
avr 10.1
(-0.9) 		8.4
(-3) 		12.2
(1.7) 		13.3
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 2.4
(-2.7)
A 		2.5
(-2.7)
A 		7.2
(-1.7)
A 		10.7
(-1)
A 		1.1
(-3)
A 		29.9
(3)
P 		29
B 1.2
(-3)
A 		9.3
(-1.7)
A 		5.7
(-2.3)
A 		3.5
(-2.6)
A 		33.7
(2.3)
P 		38.3
(3)
P 		37
C 6.8
(-3)
A 		20.2
(-0.7)
A 		7
(-3)
A 		7.5
(-2.9)
A 		20.5
(-0.7)
A 		42.2
(3)
P 		35
avr 3.5
(-3) 		10.7
(-1.7) 		6.6
(-2.4) 		7.2
(-2.3) 		18.4
(-0.3) 		36.8
(3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187066_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8197
Sequence Type Exemplar sequence
Representative Public ID Y55B1AR.4 NCBI
Target Description Y55B1AR.4 /REP_DB=WormBase Gene ID /WP=CE22490 /TR=Q9N382 /GB=AAF60784.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064816(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064816 NCBI Caenorhabditis elegans Y55B1AR.4 (Y55B1AR.4) mRNA, complete cds. 11/11 None
SNAP00000028886 ENSEMBL cdna:SNAP chromosome:CEL140:III:604043:605477:-1 11/11 None
GENEFINDER00000028888 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:604043:605477:-1 11/11 None
Y55B1AR.4 ENSEMBL cdna:known chromosome:CEL140:III:604043:605477:-1 gene:Y55B1AR.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:604042-605477(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y55B1AR.4
Entrez Gene 190300 Entrez gene
SwissProt Q9N382 EMBL-EBI
WormBase CE22490 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60784 Hypothetical protein Y55B1AR.4 [Caenorhabditis elegans] ref|NP_497217.1| Y55B1AR.4 [Caenorhabditis elegans] 1.0E-179
blast AAF60787 Hypothetical protein Y55B1AR.3 [Caenorhabditis elegans] ref|NP_497216.1| Y55B1AR.3 [Caenorhabditis elegans] 8.0E-62
Sequence
Target Sequence 
>C. ELEGANS:187066_AT
gaaaccactcaaaccgggtgcatttcggatttcgcttttgctgaagtggcacgtttgctc
aaaaccccggagattgaacttgagctattcgcggttgatgttccaccgttcattcagggt
gagccaagagaatcatacttcaatgcgatggaaaaaacgttcaatctggaaaacgtgacg
agggtgaatgcaaagagagttcggctcattggactcacgatttccgaaatggaggctgtt
ctgaaatgggtttcggtcgaaaatctagtggtgattagagtgtactcgggaaaaaactct
attgatgaaaggggtgcgattgtgattcaaaatatgctatccatcttcccacaactacaa
gtgggtagctttcatatgatagtttcgaatcctctgggcgttgcgaaaacttttgatgaa
atctattcggatcgtcttgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACCACTCAAACCGGGTGCATTT 155 359 469 Antisense
GGTGCATTTCGGATTTCGCTTTTGC 480 501 485 Antisense
TTGCTGAAGTGGCACGTTTGCTCAA 272 701 506 Antisense
AAACCCCGGAGATTGAACTTGAGCT 645 123 530 Antisense
GAGCTATTCGCGGTTGATGTTCCAC 123 389 550 Antisense
GATGTTCCACCGTTCATTCAGGGTG 400 409 565 Antisense
AGTTCGGCTCATTGGACTCACGATT 107 65 666 Antisense
CAAAATATGCTATCCATCTTCCCAC 10 191 796 Antisense
ATCCATCTTCCCACAACTACAAGTG 272 39 807 Antisense
CGAATCCTCTGGGCGTTGCGAAAAC 134 253 854 Antisense
GAAATCTATTCGGATCGTCTTGTGA 538 361 886 Antisense
Sequence Source Affymetrix Proprietary Database