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[187065_s_at]

Description ZC434.4 /REP_DB=WormBase Gene ID /WP=CE18436 /TR=SW:Q23314 /GB=CAB00064.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 97      6grp_total > 77      4grp_total > 18      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 624
1 2 3 4 range
A 801.4
(-2.6)
P 		1108.5
(3)
P 		778.9
(-3)
P 		1101
(2.9)
P 		330
B 765.8
(-2.3)
P 		846.2
(-1.5)
P 		690.9
(-3)
P 		1315.3
(3)
P 		624
C 921.3
(-3)
P 		944.5
(-2.4)
P 		1138.4
(3)
P 		1001.4
(-0.8)
P 		217
avr 829.5
(-3) 		966.4
(-0.3) 		869.4
(-2.2) 		1139.2
(3) 		310

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1025
1 2 3 4 5 6 range
A 671.3
(-3)
P 		734.1
(-2.4)
P 		877.5
(-1)
P 		751.5
(-2.2)
P 		957.1
(-0.2)
P 		1286.5
(3)
P 		615
B 758.2
(-3)
P 		875.3
(-1.9)
P 		955.4
(-1.2)
P 		785.7
(-2.7)
P 		1064.5
(-0.1)
P 		1399.9
(3)
P 		642
C 718.7
(-3)
P 		923.6
(-1.7)
P 		819.6
(-2.4)
P 		808.3
(-2.4)
P 		913.2
(-1.8)
P 		1696
(3)
P 		977
avr 716.1
(-3) 		844.3
(-2) 		884.2
(-1.6) 		781.8
(-2.5) 		978.3
(-0.9) 		1460.8
(3) 		745
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 237
1 2 3 4 range
A 291.8
(3)
P 		240.6
(0.6)
P 		203.6
(-1.1)
P 		161.2
(-3)
P 		131
B 244.2
(1.2)
P 		209
(-0.6)
P 		160.1
(-3)
P 		280.3
(3)
P 		120
C 305
(0.6)
P 		271.5
(-0.3)
P 		396.8
(3)
P 		168.9
(-3)
P 		228
avr 280.3
(3) 		240.4
(-0.1) 		253.5
(0.9) 		203.5
(-3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 444
1 2 3 4 5 6 range
A 123.7
(-3)
P 		261.1
(1.4)
P 		191.1
(-0.9)
P 		190.6
(-0.9)
P 		288.8
(2.2)
P 		313.2
(3)
P 		190
B 263.8
(-1.9)
P 		291.4
(-1.4)
P 		232
(-2.5)
P 		208.1
(-3)
P 		432.5
(1.3)
P 		522
(3)
P 		314
C 266.4
(-1.5)
P 		281.8
(-1.2)
P 		208.6
(-2.3)
P 		162.6
(-3)
P 		295.5
(-1)
P 		567.8
(3)
P 		405
avr 218
(-2.3) 		278.1
(-1.1) 		210.6
(-2.5) 		187.1
(-3) 		338.9
(0.2) 		467.7
(3) 		281
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187065_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2330
Sequence Type Exemplar sequence
Representative Public ID ZC434.4 NCBI
Target Description ZC434.4 /REP_DB=WormBase Gene ID /WP=CE18436 /TR=SW:Q23314 /GB=CAB00064.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060308(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060308 NCBI Caenorhabditis elegans ZC434.4 (ZC434.4) mRNA, complete cds. 11/11 None
SNAP00000018734 ENSEMBL cdna:SNAP chromosome:CEL140:I:10340166:10341181:-1 11/11 None
GENEFINDER00000018748 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10340166:10341181:-1 11/11 None
ZC434.4 ENSEMBL cdna:known chromosome:CEL140:I:10340116:10341204:-1 gene:ZC434.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10340096-10341036(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC434.4
Entrez Gene 172902 Entrez gene
SwissProt Q23314 EMBL-EBI
WormBase CE38014 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00064 Hypothetical protein ZC434.4 [Caenorhabditis elegans] ref|NP_492709.2| ZC434.4 [Caenorhabditis elegans] sp|Q23314|YHC4_CAEEL Hypothetical protein ZC434.4 in chromosome I 1.0E-132
blast CAE73794 Hypothetical protein CBG21344 [Caenorhabditis briggsae] 1.0E-102
blast XP_785640 PREDICTED: similar to CG9107-PB, isoform B [Strongylocentrotus purpuratus] 2.0E-14
Sequence
Target Sequence 
>C. ELEGANS:187065_S_AT
ggtgtggttctggcgattattgatcagtttgcatcattcgaggttgaagaatcgtttgtt
caacgaagcaacaccgctgacaattcactttctcagggacaattgacaatgtccatcact
ttcgataagcccgaagcagttattcaaactctggcactatgccaagacgtaggacctttt
acgatcactgattttcttgaagatcccgagtttccttccgtactaaaagattctacaact
ctctatcgcaaactgttcccatctgaagagcaaattcaagaaatggccgatacgtacgtc
gaaagatatgacacagaacaaacagaagcaagaaaagaggcgaagagaaagtattcggag
ccagacgaggacggatggattactgttactaaagccaagaaagctgcaaaatcggtaaaa
ctgaagaaagaggatgttcctcttattggtggattaaataacaagaagaaaaaggttgat
cttgcatattacacgttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGTGGTTCTGGCGATTATTGATC 33 501 190 Antisense
GCAACACCGCTGACAATTCACTTTC 339 319 257 Antisense
TGTCCATCACTTTCGATAAGCCCGA 519 557 299 Antisense
GTTATTCAAACTCTGGCACTATGCC 427 447 328 Antisense
GGCACTATGCCAAGACGTAGGACCT 382 535 342 Antisense
CTTGAAGATCCCGAGTTTCCTTCCG 254 217 385 Antisense
ATTCTACAACTCTCTATCGCAAACT 229 11 419 Antisense
ATCGCAAACTGTTCCCATCTGAAGA 264 37 434 Antisense
GAAATGGCCGATACGTACGTCGAAA 278 361 469 Antisense
GAGGATGTTCCTCTTATTGGTGGAT 594 403 619 Antisense
GTTGATCTTGCATATTACACGTTCC 670 437 664 Antisense
Sequence Source Affymetrix Proprietary Database