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[187064_at]

Description R08D7.4 /REP_DB=WormBase Gene ID /WP=CE00292 /TR=SW:P30643 /GB=CAA78050.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 10      4grp_highest_8_8 > 48      4grp_high_8_8 > 43      6grp_highest_nonorm > 76      6grp_total > 50      4grp_total > 53      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 654
1 2 3 4 range
A 1261.8
(3)
P 		1042.1
(0.9)
P 		734.6
(-2)
P 		633.3
(-3)
P 		629
B 1049.3
(2.7)
P 		1070.7
(3)
P 		899.2
(0.5)
P 		662.5
(-3)
P 		408
C 1177.3
(3)
P 		1138.8
(2.6)
P 		866.9
(-0.3)
P 		607.5
(-3)
P 		570
avr 1162.8
(3) 		1083.9
(2.1) 		833.6
(-0.7) 		634.4
(-3) 		528

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 601
1 2 3 4 5 6 range
A 1252.5
(3)
P 		982.6
(-0.7)
P 		1136.6
(1.4)
P 		1090.4
(0.8)
P 		967.7
(-0.9)
P 		811.5
(-3)
P 		441
B 1211.5
(3)
P 		1032.4
(0.3)
P 		1051.8
(0.6)
P 		1125.7
(1.7)
P 		927.7
(-1.3)
P 		815.1
(-3)
P 		396
C 1018.6
(1.9)
P 		1017.8
(1.9)
P 		1099.1
(3)
P 		1099.2
(3)
P 		651.2
(-3)
P 		778.5
(-1.3)
P 		448
avr 1160.9
(3) 		1010.9
(0.5) 		1095.8
(1.9) 		1105.1
(2.1) 		848.9
(-2.2) 		801.7
(-3) 		359
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 367
1 2 3 4 range
A 459.4
(3)
P 		226.2
(-0.8)
P 		192
(-1.4)
P 		92.7
(-3)
P 		367
B 334.6
(3)
P 		264.4
(0.8)
P 		208.4
(-0.9)
P 		141.2
(-3)
P 		193
C 389.7
(3)
P 		327.4
(1.7)
P 		302.1
(1.2)
P 		102.4
(-3)
P 		287
avr 394.6
(3) 		272.7
(0.4) 		234.2
(-0.4) 		112.1
(-3) 		283

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 230.9
(-1.7)
P 		349.5
(3)
P 		247.5
(-1)
P 		276.5
(0.1)
P 		292
(0.7)
P 		197.6
(-3)
P 		152
B 421.5
(3)
P 		343.6
(0.2)
P 		255.4
(-3)
P 		298.2
(-1.5)
P 		376.9
(1.4)
P 		303.9
(-1.2)
P 		166
C 377.6
(3)
P 		310.6
(0.6)
P 		279.8
(-0.5)
P 		221
(-2.6)
P 		210.7
(-3)
P 		260.6
(-1.2)
P 		167
avr 343.3
(3) 		334.6
(2.4) 		260.9
(-2.5) 		265.2
(-2.2) 		293.2
(-0.4) 		254
(-3) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187064_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7445
Sequence Type Exemplar sequence
Representative Public ID R08D7.4 NCBI
Target Description R08D7.4 /REP_DB=WormBase Gene ID /WP=CE00292 /TR=SW:P30643 /GB=CAA78050.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_181941(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_181941 NCBI Caenorhabditis elegans R08D7.8 (R08D7.8) mRNA, complete cds. 11/11 None
SNAP00000003056 ENSEMBL cdna:SNAP chromosome:CEL140:III:8972306:8973361:1 9/11 None
GENEFINDER00000003064 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8972507:8973575:1 11/11 None
R08D7.8 ENSEMBL cdna:known chromosome:CEL140:III:8972514:8973575:1 gene:R08D7.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8971831-8973571(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R08D7.8
Entrez Gene 3565620 Entrez gene
SwissProt Q86NF0 EMBL-EBI
WormBase CE33293 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD62040 Hypothetical protein R08D7.8 [Caenorhabditis elegans] ref|NP_871670.1| R08D7.8 [Caenorhabditis elegans] 1.0E-111
blast CAD62040 Hypothetical protein R08D7.8 [Caenorhabditis elegans] ref|NP_871670.1| R08D7.8 [Caenorhabditis elegans] 8.0E-78
blast CAE62695 Hypothetical protein CBG06843 [Caenorhabditis briggsae] 7.0E-36
blast CAE62695 Hypothetical protein CBG06843 [Caenorhabditis briggsae] 9.0E-36
blast CAE62695 Hypothetical protein CBG06843 [Caenorhabditis briggsae] 3.0E-35
blast CAG02255 unnamed protein product [Tetraodon nigroviridis] 5.0E-14
blast CAF97944 unnamed protein product [Tetraodon nigroviridis] 3.0E-10
Sequence
Target Sequence 
>C. ELEGANS:187064_AT
ttggcaagcttcttgtgatctcgccaatctttttcgcttgattccctccgagtacaatcg
aatattagaactcgggtcaggatgtggtgttagtggaattgcaattgcaaaaatgaatga
ttgttgtgtgacgctcactgattatgatgataatgtgctgaatcttttagaagagaatat
tgcgaaaaacgatctgaagagtgatactgaagattcgtcagccaacaacaatcaagcaac
agttcgctcactcaattggtgtgattttgatttctctgaatggaaggaacccacggattt
gattatcgcggccgatgttgtctacgacactgcattgctcgcctctctctgcaatgtgct
caatcttctgctccgccactcaaaagctgctatcgttgcgtgcactcgtcgtaacgagtc
gagtattgagtgtttcgagcatcatttgaaaatggcaaaactagaaattgtggaaaaatt
cgaatacgaaaacggtgcctacacaattggagaaaattcgtatcattatgcatctatttt
cccatttttctcaactctcaaaacacctacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGCAAGCTTCTTGTGATCTCGCC 681 707 630 Antisense
TCGCCAATCTTTTTCGCTTGATTCC 362 599 650 Antisense
CTTGATTCCCTCCGAGTACAATCGA 574 217 666 Antisense
GATTGTTGTGTGACGCTCACTGATT 226 435 748 Antisense
TCAAGCAACAGTTCGCTCACTCAAT 642 631 861 Antisense
GGAACCCACGGATTTGATTATCGCG 159 527 915 Antisense
GATTATCGCGGCCGATGTTGTCTAC 67 431 930 Antisense
TGTTGTCTACGACACTGCATTGCTC 187 561 945 Antisense
AAAAGCTGCTATCGTTGCGTGCACT 77 133 1011 Antisense
TATGCATCTATTTTCCCATTTTTCT 614 655 1156 Antisense
TCTCAACTCTCAAAACACCTACAAT 453 613 1178 Antisense
Sequence Source Affymetrix Proprietary Database