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[187063_at]

Description Y53G8AR.9 /REP_DB=WormBase Gene ID /WP=CE25419 /TR=Q9N3F7 /GB=AAF59540.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 23.7
(-3)
A 		50.1
(-1.2)
A 		38.4
(-2)
A 		111.1
(3)
A 		87
B 36.9
(3)
A 		22.4
(-0.2)
A 		9.3
(-3)
A 		10.5
(-2.7)
A 		28
C 34.2
(-2.2)
A 		33.2
(-2.3)
A 		25.9
(-3)
A 		90.6
(3)
A 		65
avr 31.6
(-2.1) 		35.2
(-1.6) 		24.5
(-3) 		70.7
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 13.6
(-1.7)
A 		26.3
(0.1)
A 		5
(-3)
A 		45.3
(2.9)
A 		46
(3)
A 		8.3
(-2.5)
A 		41
B 34.6
(-0.6)
A 		14.9
(-2.9)
A 		53.8
(1.7)
A 		64.4
(3)
A 		14.2
(-3)
A 		29.5
(-1.2)
A 		50
C 26.1
(-0.6)
A 		58.4
(3)
A 		24.8
(-0.8)
A 		21
(-1.2)
A 		50.4
(2.1)
A 		5.1
(-3)
A 		53
avr 24.8
(-0.8) 		33.2
(0.9) 		27.9
(-0.2) 		43.6
(3) 		36.9
(1.6) 		14.3
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 8.6
(-3)
A 		10.9
(-1.2)
A 		10
(-1.9)
A 		16.3
(3)
A 		8
B 11.8
(3)
A 		5.5
(-0.9)
A 		2.1
(-3)
A 		2.2
(-2.9)
A 		10
C 11.3
(-0.8)
A 		9.6
(-2.4)
A 		9
(-3)
A 		15.3
(3)
A 		6
avr 10.6
(2) 		8.7
(-0.6) 		7
(-3) 		11.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 2.5
(-2.3)
A 		9.4
(0.9)
A 		1.1
(-3)
A 		11.5
(1.9)
A 		13.9
(3)
A 		2
(-2.6)
A 		13
B 12.1
(0.5)
A 		4.9
(-3)
A 		13.1
(1)
A 		17.1
(3)
A 		5.8
(-2.6)
A 		11
(-0)
A 		12
C 9.7
(-0)
A 		17.8
(3)
A 		6.3
(-1.3)
A 		4.2
(-2.1)
A 		16.3
(2.4)
A 		1.7
(-3)
A 		16
avr 8.1
(-0.3) 		10.7
(1.9) 		6.8
(-1.4) 		10.9
(2.1) 		12
(3) 		4.9
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187063_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7811
Sequence Type Exemplar sequence
Representative Public ID Y53G8AR.9 NCBI
Target Description Y53G8AR.9 /REP_DB=WormBase Gene ID /WP=CE25419 /TR=Q9N3F7 /GB=AAF59540.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065289(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065289 NCBI Caenorhabditis elegans Y53G8AR.9 (Y53G8AR.9) mRNA, complete cds. 11/11 None
SNAP00000011802 ENSEMBL cdna:SNAP chromosome:CEL140:III:3296726:3321234:-1 11/11 None
GENEFINDER00000011806 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3318078:3321234:-1 11/11 None
Y53G8AR.9 ENSEMBL cdna:known chromosome:CEL140:III:3317734:3321234:-1 gene:Y53G8AR.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3318773-3321234(-) 93.88 100.0
Public Domain and Genome References
Gene Title
Ensembl Y53G8AR.9
Entrez Gene 175434 Entrez gene
SwissProt Q9N3F7 EMBL-EBI
WormBase CE25419 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF59540 Hypothetical protein Y53G8AR.9 [Caenorhabditis elegans] ref|NP_497690.1| Y53G8AR.9 [Caenorhabditis elegans] 1.0E-127
blast AAF59540 Hypothetical protein Y53G8AR.9 [Caenorhabditis elegans] ref|NP_497690.1| Y53G8AR.9 [Caenorhabditis elegans] 1.0E-125
blast CAE69484 Hypothetical protein CBG15687 [Caenorhabditis briggsae] 1.0E-101
blast CAE69484 Hypothetical protein CBG15687 [Caenorhabditis briggsae] 1.0E-100
blast AAK26378 putative zinc finger protein [Heterodera glycines] 1.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.3E-6
Sequence
Target Sequence 
>C. ELEGANS:187063_AT
agacgacgcgcgaactgacgcttatcctggcgcgtgccatcgccgccgtcggtcacggtg
acacaatcggcggaattccgatttgcaaagagtttcaaacgggccgttgtgctcgcggag
tcaatcgatgccgttattggcatgtgaatgtggatttggaacgagatcgacgcaatcgtg
gactaccaccatcgaatgattttggacctggcggaggtggaggtggaatgggtggaggtg
gaggatctggaggatctggtggaggatcaggaagattcccaccaccaccaccaccatatg
gtggaggtggaagacgtcgaccttacgatgattatgatagtgatccgatcaagcgtgggc
gttatggatccgatgatcgtctgatggagttggagaagcgaaatgctgagctatcgaagg
aagttgattcgctacgtcgggaactacaacgggaacacgatcgttacgaggatttgtatg
ctctgttccgtcagcagagtggtggagcaccggcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACGACGCGCGAACTGACGCTTAT 499 71 368 Antisense
CGGTCACGGTGACACAATCGGCGGA 504 205 417 Antisense
GTTTCAAACGGGCCGTTGTGCTCGC 662 447 459 Antisense
GTGCTCGCGGAGTCAATCGATGCCG 34 477 476 Antisense
GATCGACGCAATCGTGGACTACCAC 454 417 532 Antisense
AGGATCAGGAAGATTCCCACCACCA 95 57 630 Antisense
GGAAGACGTCGACCTTACGATGATT 168 531 676 Antisense
GATCCGATCAAGCGTGGGCGTTATG 289 415 709 Antisense
GTTGATTCGCTACGTCGGGAACTAC 97 439 790 Antisense
GAGGATTTGTATGCTCTGTTCCGTC 205 403 835 Antisense
AGCAGAGTGGTGGAGCACCGGCACC 659 77 860 Antisense
Sequence Source Affymetrix Proprietary Database