[Home] | [Total List]

[187062_at]

Description F45G2.9 /REP_DB=WormBase Gene ID /WP=CE16052 /TR=SW:O62251 /GB=CAB07618.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 76      4grp_high_8_8 > 21      6grp_total > 78      4grp_total > 18      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 147.4
(-3)
P 		177.2
(-1.1)
A 		148.2
(-2.9)
A 		239.1
(3)
P 		92
B 175.4
(-1.3)
P 		175.4
(-1.3)
P 		149.8
(-3)
P 		240.2
(3)
P 		90
C 124.3
(-3)
P 		173.7
(-1.1)
P 		169.7
(-1.2)
P 		279.4
(3)
P 		155
avr 149
(-3) 		175.4
(-1.5) 		155.9
(-2.6) 		252.9
(3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 169.7
(2.5)
P 		95.9
(-3)
A 		166.9
(2.3)
P 		149.4
(1)
P 		132.5
(-0.3)
P 		176.4
(3)
P 		81
B 161.2
(-0.3)
P 		128.4
(-3)
P 		177.3
(1)
P 		142.4
(-1.9)
P 		166.6
(0.1)
P 		201.6
(3)
P 		73
C 126.6
(-1.9)
P 		197.9
(3)
P 		161.3
(0.5)
P 		111.2
(-3)
P 		182.8
(2)
P 		173.6
(1.3)
P 		87
avr 152.5
(-0.8) 		140.7
(-2.2) 		168.5
(1.1) 		134.3
(-3) 		160.6
(0.2) 		183.9
(3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 53.7
(3)
P 		38.5
(-1.9)
A 		38.7
(-1.8)
A 		35
(-3)
P 		19
B 55.9
(3)
P 		43.3
(-0.6)
P 		34.7
(-3)
P 		51.2
(1.7)
P 		21
C 41.1
(-3)
P 		49.9
(-0.1)
P 		59.2
(3)
P 		47.1
(-1)
P 		18
avr 50.2
(3) 		43.9
(-3) 		44.2
(-2.7) 		44.4
(-2.5) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 31.3
(-3)
P 		34.1
(-1.6)
A 		36.3
(-0.4)
P 		37.9
(0.4)
P 		40
(1.5)
P 		42.9
(3)
P 		12
B 56.1
(-0.1)
P 		42.7
(-2.2)
P 		43
(-2.2)
P 		37.7
(-3)
P 		67.7
(1.8)
P 		75.2
(3)
P 		38
C 46.9
(0.9)
P 		60.4
(3)
P 		41
(-0.1)
P 		22.4
(-3)
P 		59.2
(2.8)
P 		58.1
(2.6)
P 		38
avr 44.8
(-0.2) 		45.7
(0) 		40.1
(-1.3) 		32.7
(-3) 		55.6
(2.3) 		58.7
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187062_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8041
Sequence Type Exemplar sequence
Representative Public ID F45G2.9 NCBI
Target Description F45G2.9 /REP_DB=WormBase Gene ID /WP=CE16052 /TR=SW:O62251 /GB=CAB07618.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067375(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067375 NCBI Caenorhabditis elegans F45G2.9 (F45G2.9) mRNA, complete cds. 11/11 None
SNAP00000011674 ENSEMBL cdna:SNAP chromosome:CEL140:III:13435303:13436446:-1 11/11 None
GENEFINDER00000011680 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13435303:13442033:-1 11/11 None
F45G2.9 ENSEMBL cdna:known chromosome:CEL140:III:13435302:13436459:-1 gene:F45G2.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13435298-13436424(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F45G2.9
Entrez Gene 185813 Entrez gene
SwissProt O62251 EMBL-EBI
WormBase CE16052 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1640701_AT dm
DROSGENOME1:150221_AT dm
CHICKEN:GGA.12167.1.S1_AT FtsJ homolog 2 (E. coli) gga
HU35KSUBA:RC_AA436569_AT FtsJ homolog 2 (E. coli) hs
HG-U133A:218356_AT FtsJ homolog 2 (E. coli) hs
HG-U133_PLUS_2:218356_AT FtsJ homolog 2 (E. coli) hs
HG-FOCUS:218356_AT FtsJ homolog 2 (E. coli) hs
HG-U133A_2:218356_AT FtsJ homolog 2 (E. coli) hs
U133_X3P:G7019376_3P_AT FtsJ homolog 2 (E. coli) hs
U133_X3P:HS.279877.1.S1_3P_A_AT FtsJ homolog 2 (E. coli) hs
HG-U133A_2:222130_S_AT FtsJ homolog 2 (E. coli) hs
HG-U133_PLUS_2:222130_S_AT FtsJ homolog 2 (E. coli) hs
HG-U133A:222130_S_AT FtsJ homolog 2 (E. coli) hs
HG-U95C:63883_AT FtsJ homolog 2 (E. coli) hs
HG-U95E:73350_AT FtsJ homolog 2 (E. coli) hs
MOE430A:1448969_AT FtsJ homolog 2 (E. coli) mm
MOUSE430A_2:1448969_AT FtsJ homolog 2 (E. coli) mm
MOUSE430_2:1448969_AT FtsJ homolog 2 (E. coli) mm
MU19KSUBA:TC16232_AT FtsJ homolog 2 (E. coli) (Ftsj2), mRNA mm
MU19KSUBB:TC34125_AT FtsJ homolog 2 (E. coli) (Ftsj2), mRNA mm
YEAST_2:1772233_AT Mitochondrial 21S rRNA methyltransferase, required for methylation of U(2791) in 21S rRNA; MRM2 deletion confers thermosensitive respiration and loss of mitochondrial DNA; has similarity to Spb1p and Trm7p, and to E. coli FtsJ/RrmJ Sc
Protein Similarities
Method ID Description E-Value
blast CAA21773 Hypothetical protein Y76A2A.2 [Caenorhabditis elegans] emb|CAB07620.2| Hypothetical protein Y76A2A.2 [Caenorhabditis elegans] ref|NP_499778.1| CU (copper) ATPase family member (cua-1) [Caenorhabditis elegans] dbj|BAA20550.1| copper transporting ATPase [Caenorhabditis elegans] 0.0
blast CAE73686 Hypothetical protein CBG21197 [Caenorhabditis briggsae] 1.0E-168
blast AAB62695 P-type ATPase [Caenorhabditis elegans] 1.0E-167
blast CAB07618 Hypothetical protein F45G2.9 [Caenorhabditis elegans] ref|NP_499776.1| F45G2.9 [Caenorhabditis elegans] sp|O62251|RRM1_CAEEL Putative ribosomal RNA methyltransferase F45G2.9 (rRNA (uridine-2'-O-)-methyltransferase) 1.0E-119
blast CAE73695 Hypothetical protein CBG21206 [Caenorhabditis briggsae] 4.0E-89
blast AAI06596 Unknown (protein for MGC:131369) [Xenopus laevis] 2.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR002877 EMBL-EBI Ribosomal RNA methyltransferase RrmJ/FtsJ 1.7E-80
Pfam IPR002877 EMBL-EBI Ribosomal RNA methyltransferase RrmJ/FtsJ 1.7E-80
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 3.5E-21
Pfam IPR002744 EMBL-EBI Protein of unknown function DUF59 2.9E-13
Pfam IPR002744 EMBL-EBI Protein of unknown function DUF59 1.9E-11
Pfam IPR002877 EMBL-EBI Ribosomal RNA methyltransferase RrmJ/FtsJ 1.7E-80
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000011680 1 255-277
Sequence
Target Sequence 
>C. ELEGANS:187062_AT
gcacggagcgccttcaaattaatcgaaattaatgagaaattcaaatttctgaaaccggag
agtactgtaatcgatattggatgtgcacctggctcatggcttcaagtagttgtgcagaag
tgtccaaatggatatgcatcgggtgtagatttacaaaatgttctcccaatccgcggtgcc
gacatcttatcactctccgatattaccgatccagcagtgaaactgaaaattcgagaaaaa
ctagcacatcggcaagtggatgttgttctaagtgatatggcaccaaatccgactggagat
aacgctacggatcacttgaggcttatcgagctgtgccgatccgtttttcgattattttca
gtggaaaatgaaattgaattagtgaagaatggagtttacttgtgcaagatttgggatgga
agtgcacgtgccgagttcgtccgtgaactttccgatcgattctcaactgtcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACGGAGCGCCTTCAAATTAATCG 486 313 112 Antisense
CGATATTGGATGTGCACCTGGCTCA 124 247 183 Antisense
ACCTGGCTCATGGCTTCAAGTAGTT 552 87 198 Antisense
TTTACAAAATGTTCTCCCAATCCGC 508 673 261 Antisense
TATCACTCTCCGATATTACCGATCC 634 657 299 Antisense
ATAACGCTACGGATCACTTGAGGCT 197 23 410 Antisense
TGAGGCTTATCGAGCTGTGCCGATC 560 567 428 Antisense
TGTGCCGATCCGTTTTTCGATTATT 16 557 443 Antisense
ATGGAAGTGCACGTGCCGAGTTCGT 10 53 527 Antisense
TTCGTCCGTGAACTTTCCGATCGAT 442 693 547 Antisense
TTTCCGATCGATTCTCAACTGTCAA 153 671 560 Antisense
Sequence Source Affymetrix Proprietary Database